Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0538 ATGTTTTTGTTTTCCTTTTTAATATCTAAAGATTCTAACTCTTTTTCTCTCCAATTCAAATTCATTATTTTCTTCCTTATTAGTGTGAATACTTACACCTTTTTCTTCCCCTTTAATAAGTTCACAATCTATGATGGACAGCCTCCCCATGCCCGAGCAAAGATTACAAAAAGTCGCTCCACCAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGCAATTATCCAGTGGCTCACATATCATATGAATTGAAAGCATTATGGGTGGCCCCTACACAGACCGAGTTTTCCCTCAGCAATGCAGATATGTTCCCCACATTCCCTTTTTTTCGATCGAGGTCAAATCGTGTTGACAACTCTCTTTCTGGACCCCTGGCTGATCAAAAGGATCAAGGCGCCCAGGCGCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTGAACTTTCATGGGCGGGTGACAATTGCTTCCGTTAAAAACTTTCAGCTGGTGGCTTCCACAGAAAATGGACCTGCTGGACCAGAACATGATAAGATCAAAGTTGGGAAGGATCTGTTTACAATGGGTTATCGATATCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 654 0.4312 MFLFSFLISKDSNSFSLQFKFIIFFLISVNTYTFFFPFNKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELKALWVAPTQTEFSLSNADMFPTFPFFRSRSNRVDNSLSGPLADQKDQGAQAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASTENGPAGPEHDKIKVGKDLFTMGYRYPISAFQAFAICLSSFDTKIACE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0538 217 ProSitePatterns Tub family signature 1. 152 165 IPR018066 -
Amo05g0538 217 SUPERFAMILY Tubby C-terminal domain-like 38 217 IPR025659 -
Amo05g0538 217 Gene3D Tubby Protein; Chain A 34 217 IPR025659 -
Amo05g0538 217 PRINTS Tubby superfamily signature 134 151 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 28 52 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 174 193 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 6 22 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 77 104 IPR000007 -
Amo05g0538 217 PRINTS Tubby superfamily signature 195 217 IPR000007 -
Amo05g0538 217 Pfam Tub family 39 212 IPR000007 -
Amo05g0538 217 PANTHER TUBBY-RELATED 92 217 - -
Amo05g0538 217 PANTHER TUBBY-RELATED 36 90 - -
Amo05g0538 217 ProSitePatterns Tub family signature 2. 202 217 IPR018066 -
Amo05g0538 217 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 92 217 - -
Amo05g0538 217 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 36 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0538 Amo-Chr5 6225304 6231988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0538 30 217 TUB Transcription Factor Family AT2G47900 56.000 7.24e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo05g0538 Tub 6.6e-47 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0538 K19600 - gmx:100815464 300.441