Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0522 TCCAGGCTATTTCTTTCTTTACTCGTTCCTCTCCCTCTCACTCTTGTTGCTTTCTATATATATAAAGAGCATCCATCATTACCAACATATCAGTTAAGAGAGAGAGAGATGGGAAGAGCACCTTGCTGTGACAAAGCGAACGTGAAGAAAGGGCCATGGTCGCCTGAAGAAGACGCGAAACTCAAGTCTTACATCGAGCAGCACGGCACAGGAGGCAATTGGATCGCCCTCCCTCAGAAGATAGGACTTAAGAGATGCGGGAAAAGCTGTCGTCTAAGATGGCTGAATTATCTTCGGCCAAACATTAAACACGGTAGTTTCTCAGAAGAAGAAGACAACATCATCTGCACCCTGTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGACATCAAGAACTACTGGAACACCAGGCTCAAGAAGAAGCTCCTTGCAAAGCAAAGGAAACTAGACCAACCTCCTCCTATTCCTTATTGCAATTCCTCTTCTAATTCTTCTTCTTCTTCTTCAGTTCCACAACTAGTAGTACCACCTGCACCGCCTTCCATCCACGACTACGATCTCACCTCCCTCATATCCTCCTTCCCACAGCAACACCACCTTTATCCACCGCCAAATATGTATCACCATCAGCAAGGCTTTGAAAGCTTATTGATAGATGATGATTTGAGCCATCTCATGGCGTGTGTAGTGAGTAATAATCAACAAATGGAAGTGCAGCAGGGTTTTTATGGCAGCACGACTTCAACAGAGAGCACTACTACTACTAGTTGGGGACCTGATATGACCTCTCTCGTTAACTACTCATCACCACCACCACCACCACCACCTTTGCTTTATCAAGATGACGCTTCACCTGCTTCTAGGTACTTTGGAATGCAAATGCTATAA 921 0.4517 SRLFLSLLVPLPLTLVAFYIYKEHPSLPTYQLREREMGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGSFSEEEDNIICTLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLAKQRKLDQPPPIPYCNSSSNSSSSSSVPQLVVPPAPPSIHDYDLTSLISSFPQQHHLYPPPNMYHHQQGFESLLIDDDLSHLMACVVSNNQQMEVQQGFYGSTTSTESTTTTSWGPDMTSLVNYSSPPPPPPPLLYQDDASPASRYFGMQML* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0522 306 SMART sant 103 151 IPR001005 -
Amo05g0522 306 SMART sant 49 100 IPR001005 -
Amo05g0522 306 MobiDBLite consensus disorder prediction 166 183 - -
Amo05g0522 306 SUPERFAMILY Homeodomain-like 47 145 IPR009057 -
Amo05g0522 306 MobiDBLite consensus disorder prediction 254 285 - -
Amo05g0522 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 98 IPR017930 -
Amo05g0522 306 MobiDBLite consensus disorder prediction 160 184 - -
Amo05g0522 306 CDD SANT 52 98 IPR001005 -
Amo05g0522 306 Gene3D - 105 166 - -
Amo05g0522 306 ProSiteProfiles Myb-like domain profile. 45 98 IPR001005 -
Amo05g0522 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Amo05g0522 306 PANTHER OS09G0431300 PROTEIN 37 177 - -
Amo05g0522 306 Pfam Myb-like DNA-binding domain 105 147 IPR001005 -
Amo05g0522 306 Pfam Myb-like DNA-binding domain 50 98 IPR001005 -
Amo05g0522 306 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Amo05g0522 306 PANTHER OS09G0431300 PROTEIN 37 177 - -
Amo05g0522 306 CDD SANT 106 149 IPR001005 -
Amo05g0522 306 MobiDBLite consensus disorder prediction 254 276 - -
Amo05g0522 306 Gene3D - 43 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0522 Amo-Chr5 6053090 6054437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0522 37 159 MYB Transcription Factor Family AT3G49690 92.683 2.95e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g0522 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0522 K09422 - gmx:106795158 256.914