Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0520 ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACGACGGCCACACCACCTCCTCCGTCAACCAAACCCAAGCCGTATTCCTGTCATCATGAGGCACCAGAGCCATCTCTAACGCTGGGTCTATCCGGCGAGAGCTTCCTGAAAAGCAATAATAATAAAGTCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAAGAGCTTCAAGAACTGAAGGCGCTGAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGGCTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA 840 0.5214 MGLDQDANNNNNNNSSSSGLELVLGLSLTTTTATPPPPSTKPKPYSCHHEAPEPSLTLGLSGESFLKSNNNKVAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0520 279 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Amo05g0520 279 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Amo05g0520 279 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Amo05g0520 279 Coils Coil 207 237 - -
Amo05g0520 279 SMART HOX_1 143 205 IPR001356 GO:0003677
Amo05g0520 279 MobiDBLite consensus disorder prediction 116 150 - -
Amo05g0520 279 CDD homeodomain 145 202 IPR001356 GO:0003677
Amo05g0520 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 279 - -
Amo05g0520 279 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Amo05g0520 279 Gene3D - 138 206 - -
Amo05g0520 279 MobiDBLite consensus disorder prediction 1 100 - -
Amo05g0520 279 PANTHER - 15 279 - -
Amo05g0520 279 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Amo05g0520 279 MobiDBLite consensus disorder prediction 1 34 - -
Amo05g0520 279 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Amo05g0520 279 MobiDBLite consensus disorder prediction 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0520 Amo-Chr5 6019176 6020100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0520 1 279 Homeobox Transcription Factor Family AT4G37790 55.732 5.15e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g0520 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0520 K09338 - gmx:100795135 300.827