Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0517 ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACGACGGCCACACCACCTCCTCCGTCAACCAAACCCAAGCCGTATTCCTGTCATCATGAGGCACCAGAGCCATCTCTAACGCTGGGTCTATCCGGCGAGAGCTTCCTGAAAAGCAATAATAATAAAGTCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAAGAGCTTCAAGAACTGAAGGCGCTGAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGGCTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA 840 0.5214 MGLDQDANNNNNNNSSSSGLELVLGLSLTTTTATPPPPSTKPKPYSCHHEAPEPSLTLGLSGESFLKSNNNKVAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0517 279 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Amo05g0517 279 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Amo05g0517 279 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Amo05g0517 279 Coils Coil 207 237 - -
Amo05g0517 279 SMART HOX_1 143 205 IPR001356 GO:0003677
Amo05g0517 279 MobiDBLite consensus disorder prediction 116 150 - -
Amo05g0517 279 CDD homeodomain 145 202 IPR001356 GO:0003677
Amo05g0517 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 279 - -
Amo05g0517 279 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Amo05g0517 279 Gene3D - 138 206 - -
Amo05g0517 279 MobiDBLite consensus disorder prediction 1 100 - -
Amo05g0517 279 PANTHER - 15 279 - -
Amo05g0517 279 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Amo05g0517 279 MobiDBLite consensus disorder prediction 1 34 - -
Amo05g0517 279 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Amo05g0517 279 MobiDBLite consensus disorder prediction 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0517 Amo-Chr5 5972380 5974365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0517 1 279 Homeobox Transcription Factor Family AT4G37790 55.732 5.15e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g0517 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0517 K09338 - gmx:100795135 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0517 05 5972380 5974365 Amo01g1360 01 23825985 23829098 PCT
Amo05g0517 05 5972380 5974365 Amo11g0904 11 25261491 25264783 PCT
Amo01g1360 01 23825985 23829098 Amo05g0517 05 5972380 5974365 PCT
Amo11g0904 11 25261491 25264783 Amo05g0517 05 5972380 5974365 PCT