Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0500 ATGCCGCAACACATTTTCAACCCTGTGCGATTCTTGCTACTGGTTTTACTATGCTCAAGTCGTTTGACTCAAGGGATGTCGTTTTCACTTTCTCTCACAAGAGGCACCCAGATTTTGCAGCAAGTGAAGAACACTGAGCTTCAAGACCAAAACGACAGCCTCAAAAACTGGTCACTCGACGCACACAGCACTAGTCCTTGTAACTGGACCGGCATTACCTGTGACGCACGGAACCAATCGGTTCTCTCCATCGACCTCTCCGAAACCGGCGTCTCCGGCTCTTTCCCATCCGGTTTTTGCCGCATTCAGACTCTCCAAACCCTCAACCTCGCTTCCAACTTTCTAGGCGGCGCCATCTCCTCTGAATCACTCTCTCTGTGTTCCCACCTCCGCCTTTTGAACCTCTCTGACAACCTCTTCGTCGGACCTCTGCCGGAATTCTCGCTGGAATTTTCTCAACTAACAGAACTCGACCTCTCAAAGAACAACTTCAGCGGCGAAATTCCGGCCAGTTTCGGCCGGTTCCCGAACGTGAACGTGCTCGTTCTATCAGGGAACCTTCTCAATGGAACCATTCCTCCATTCTTGGGGAACCTCAGTGCGCTAGTTCATCTTGAACTCGCGTATAACCCATTGAAACCAGGATCATTACCTTCACAAATAGGAAACCTCTCTAACCTGGAAATTCTGTTCCTCGCACAAAATAACCTCATAGGTGAAATACCAGACTCCATTGGAAACCTCATGAAGCTCAAGAACTTGGATTTGTCTCAGAACTCATTGTCAGGTAAGATCCCAAGCAGCATTTCAAGATTGAAGAGTGTGAAGCAAATAGAGCTATTCTATAACCAGCTTTCTGGCGAAGTTCCACGTGGCGTAGGAAACCTCACAAGTTTGGTTCGTTTGGACCTCTCTCAGAACGCTCTCACGGGAACACTGCCAGATTCAGTTGCTGCATTGCGCCTTAATTCTCTTAACTTGAACGACAACCTTCTCAGTGGAGAAATCCCTATTAGTCTATCTTCGAACCCTAAGTTGCAGCAATTGAAGCTCTTCAACAACAGTTTCACCGGGAAACTACCGGAAGATCTCGGAAGATACTCTGAGTTAGAGGAATTCGATGTCTCAACCAATGATTTCGCCGGTGAATTGCCCAAGTACCTTTGCCAAGGGAACAAGCTTCAGCGTTTCCTCACTTTCACGAATCGGTTTTCCGGAACTATTCCTGATCAATACGGAGACTGTGATTCTCTTGAATATGTCAGAATCGAGAACAACCAGTTCTCCGGTCAAGTACCACCGAAGTTCTGGAGCCTCCCGAAGCTTCAGCTTCTTCAAATGGATAACAACAGGTTTGAAGGTTCTGTCTCTTCTTCTGTATCCAGCGCCAGGGGAATCACTGTTCTTCTTTTATCCGGTAACAGCTTCTCAGGGAATATTCCGAGGGAATTTTGCGAACTCGATCAGCTTGTGAAGATTGACATCAGCAAGAACAGGTTTTCCGGCGAAGTTCCCGGTTGCATAACAGGGTTGAAAAGGTTGCAGAAGCTTAGGATGCAGAATAACGCGTTCTCCGGTGATATTCCCGGTAATGTGAGCTCATGGACCGAGTTGACTGAGTTGAACTTGTCTCATAACCAGTTCTCCGGTTCGATCCCGCCAAAACTCGGTGACTTGCCGCAGTTGACTTACCTTGATCTCGCCGGAAACTTGCTGACAGGTGAGATTCCGGTGGAGCTGACGAAACTCACACTCAATCAATTCAATATATCTGACAACAAATTGTACGGAGAAGTTCCTTCAGGTTTCAACCACCAAGTTTACTTGTCAGGTCTAATGGGAAACCCTGGTCTCTGTAGCTCAGTTATTAAAGAGCTTTCTCCTTGTTCCAAACGCAGACCCTTTTCCATCATTGCTATACTTGCTTTATCTGCAAGTGTAGTGCTCCTTCTGCTGTCTTTGTTCTGTTTCTTGAAGAAAACAAAGTCAATTCATTTTGGTGCCAAGTCCAAGCGTTCATTCAAGACAACAACTTTCCAACGGGTTGCTTTCAACGAAGAAGATATATTTCCCTTGTTAACTGATGAGAATGTGATTGCTTCTGGAAGTTCCGGTCGGGTCTACAGAGTGAACCTTGCCAAGACGGGTCAGAAAGTGGCGGTGAAGAAGCTTTGGGGAGGAGGAAGACAAGAGCCAGACACGGAGACTGAATTGGTGTTCAGATCGGAGATTGAGACCTTGGGGATGATCCGGCATGCTAACATTGTGAAGCTGTTGTTCAGTTGCAGTGGTGATGATTTCAGGATATTGGCGTATGAATACATGGAGAATGGAAGTTTGGGTGATGTTTTGCATGGGGAAAAGTGTGGTGAGTTGTTGGATTGGAACAAGAGGTTTGAAATTGCTGTGGGTGCGGCTATGGGGTTGGCTTATTTGCACCATGATTGTGTGCCTGCTATAGTTCATAGGGATGTGAAGAGCAATAACATATTGCTTGATCATGAGTTTAGGCCTCGTGTAGCGGATTTTGGGCTTGCTAAGACCTTGCAGCGTGAGGCTGGTGAGGGAGGTGCTGGTGCCGGTGCCATGTCCAGGGTTGCTGGATCATATGGTTACATTGCCCCGGAGTATGCTTATACACTCAAAGTAACTGAAAAGAGTGATGTCTACAGTTTTGGTGTGGTTTTGATGGAACTGATCACGGGCAAGAGGCCAAATGACCCTTCTTTTGGTGAGAACAAGGACATAGTGAGATGGGTCACTGAGACTTCTTTGCTATCATCTGTTGAAGGAGAAAATGGCAGTTTTGAGGGTGGTCACGATCATATTGATATTATCGCTAAGATTGTGGACCCAAGATTGAACCCAGCAACTTGTGATTATGAAGAGTTTGAGAAAGTTCTAAATGTGGCCCTACTTTGCACCTCAGTGTTTCCCATTAACAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAGCTGCCTTGTCCCAAGTTATGA 3009 0.4643 MPQHIFNPVRFLLLVLLCSSRLTQGMSFSLSLTRGTQILQQVKNTELQDQNDSLKNWSLDAHSTSPCNWTGITCDARNQSVLSIDLSETGVSGSFPSGFCRIQTLQTLNLASNFLGGAISSESLSLCSHLRLLNLSDNLFVGPLPEFSLEFSQLTELDLSKNNFSGEIPASFGRFPNVNVLVLSGNLLNGTIPPFLGNLSALVHLELAYNPLKPGSLPSQIGNLSNLEILFLAQNNLIGEIPDSIGNLMKLKNLDLSQNSLSGKIPSSISRLKSVKQIELFYNQLSGEVPRGVGNLTSLVRLDLSQNALTGTLPDSVAALRLNSLNLNDNLLSGEIPISLSSNPKLQQLKLFNNSFTGKLPEDLGRYSELEEFDVSTNDFAGELPKYLCQGNKLQRFLTFTNRFSGTIPDQYGDCDSLEYVRIENNQFSGQVPPKFWSLPKLQLLQMDNNRFEGSVSSSVSSARGITVLLLSGNSFSGNIPREFCELDQLVKIDISKNRFSGEVPGCITGLKRLQKLRMQNNAFSGDIPGNVSSWTELTELNLSHNQFSGSIPPKLGDLPQLTYLDLAGNLLTGEIPVELTKLTLNQFNISDNKLYGEVPSGFNHQVYLSGLMGNPGLCSSVIKELSPCSKRRPFSIIAILALSASVVLLLLSLFCFLKKTKSIHFGAKSKRSFKTTTFQRVAFNEEDIFPLLTDENVIASGSSGRVYRVNLAKTGQKVAVKKLWGGGRQEPDTETELVFRSEIETLGMIRHANIVKLLFSCSGDDFRILAYEYMENGSLGDVLHGEKCGELLDWNKRFEIAVGAAMGLAYLHHDCVPAIVHRDVKSNNILLDHEFRPRVADFGLAKTLQREAGEGGAGAGAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDPSFGENKDIVRWVTETSLLSSVEGENGSFEGGHDHIDIIAKIVDPRLNPATCDYEEFEKVLNVALLCTSVFPINRPSMRRVVELLKDHKLPCPKL* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0500 1002 ProSiteProfiles Protein kinase domain profile. 693 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0500 1002 SMART serkin_6 693 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0500 1002 Pfam Protein kinase domain 695 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0500 1002 SUPERFAMILY RNI-like 291 629 - -
Amo05g0500 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Amo05g0500 1002 SUPERFAMILY Protein kinase-like (PK-like) 693 992 IPR011009 -
Amo05g0500 1002 Pfam Leucine rich repeat 225 285 IPR001611 GO:0005515
Amo05g0500 1002 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Amo05g0500 1002 Pfam Leucine rich repeat 152 212 IPR001611 GO:0005515
Amo05g0500 1002 SMART LRR_typ_2 151 175 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 439 463 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 511 535 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 224 248 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 559 583 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 199 223 IPR003591 -
Amo05g0500 1002 SMART LRR_typ_2 296 320 IPR003591 -
Amo05g0500 1002 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Amo05g0500 1002 SUPERFAMILY RNI-like 78 394 - -
Amo05g0500 1002 Gene3D Phosphorylase Kinase; domain 1 666 774 - -
Amo05g0500 1002 Gene3D Ribonuclease Inhibitor 302 631 IPR032675 -
Amo05g0500 1002 Gene3D Transferase(Phosphotransferase) domain 1 775 998 - -
Amo05g0500 1002 PRINTS Leucine-rich repeat signature 251 264 - -
Amo05g0500 1002 PRINTS Leucine-rich repeat signature 296 309 - -
Amo05g0500 1002 Gene3D Ribonuclease Inhibitor 192 294 IPR032675 -
Amo05g0500 1002 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Amo05g0500 1002 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 997 - -
Amo05g0500 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 11 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0500 Amo-Chr5 5838854 5842963 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0500 36 996 Receptor kinase-like Gene Family AT5G65710 56.513 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo05g0500 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0500 - - gmx:100813889 1352.04