Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0497 ATGATGGAAATTGCATCCAGCAACTACTTGGCTGAATTTGGAATGGAAGAATATTCTAGCAGCTTCCAGGAATACCCGATGATGATGAATTCATTTGAAGAAATGCTTGATAAGTTTGAGATGGACATGCAATCTATGTCATCAGCCTACTCTGAAACCAAACCACCACCACATCAACTTCAATCCCCTTTTAACACTGCCATGCCTTCTAGATCCGCCTCTCCATCACCACCCAAACTTATCTCCTTTGAGGCACCGTCTCTTCCTAATTCTTCCAACATTAAGAACCCTAATCTGATGATGGACGACCACATTCACTTCTCTGCTTTCTTCAACCATGATAATCCACCGCATAAGGTCCTTCCCGCCACAGCTAGGAACCCAATCCAAGCTCAGGAGCATGTAATCGCCGAAAGAAAACGCCGGGAAAAGCTCAGCCAGAGGTTCGTCGCTCTTTCCGCCATGGTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAATTTTAGGAGATGCCATAAAATATGTGAAGCAACTACAGGAACGAGTGCAGTTTTTGGAGGAGGAGAAGGCTAGAAAGAAAACTATGGTTGAATCAGGGGTGGCAGTAAAGAGATGTTTCGTGTTTGTTGAAGATGAAGATAATAATGAGAACGAAATTTCAGCAGCAGCAGCATTATTGGATGGAAATTGTAATACACTTCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACGTACTCATCAGAATCCACTGCCATAAACAAGAGTGCAAGAACAGTAGGGGTGCTCGTGAGGCTGCAATACTCTCCGTATTAGAGAAGCATAATCTCACTGTTCACACAACCACCTCTTTGCCCTTCGGCAATGACACTCTCGATATCACTATTCTCGCTCAGATGAAGAAGGAATGCTCCATTAGGACAAAGGATCTAGTAGGAAGCCTACGGGTGGCATTGACACAATTCAGTTGA 969 0.4427 MMEIASSNYLAEFGMEEYSSSFQEYPMMMNSFEEMLDKFEMDMQSMSSAYSETKPPPHQLQSPFNTAMPSRSASPSPPKLISFEAPSLPNSSNIKNPNLMMDDHIHFSAFFNHDNPPHKVLPATARNPIQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQERVQFLEEEKARKKTMVESGVAVKRCFVFVEDEDNNENEISAAAALLDGNCNTLPEIKARVSGKDVLIRIHCHKQECKNSRGAREAAILSVLEKHNLTVHTTTSLPFGNDTLDITILAQMKKECSIRTKDLVGSLRVALTQFS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0497 322 MobiDBLite consensus disorder prediction 46 77 - -
Amo05g0497 322 PANTHER TRANSCRIPTION FACTOR NAI1 8 321 - -
Amo05g0497 322 Coils Coil 168 195 - -
Amo05g0497 322 PANTHER BHLH TRANSCRIPTION FACTOR 8 321 - -
Amo05g0497 322 SMART finulus 135 184 IPR011598 GO:0046983
Amo05g0497 322 CDD bHLH_AtNAI1_like 131 203 - -
Amo05g0497 322 Pfam Helix-loop-helix DNA-binding domain 132 179 IPR011598 GO:0046983
Amo05g0497 322 Gene3D - 130 203 IPR036638 GO:0046983
Amo05g0497 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Amo05g0497 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0497 Amo-Chr5 5775270 5776950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0497 125 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.485 9.56e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0497 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0497 - - aip:107642660 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0497 05 5775270 5776950 Amo01g1415 01 26429712 26432655 PCT
Amo05g0497 05 5775270 5776950 Amo11g0874 11 23394633 23399865 PCT
Amo01g1415 01 26429712 26432655 Amo05g0497 05 5775270 5776950 PCT
Amo11g0874 11 23394633 23399865 Amo05g0497 05 5775270 5776950 PCT