Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0496 ATGATTTCCACCGAGGAATCATGGACTACTTGGCTCTGTGATTTGGAAGAAGAGGACTACAGTTTCATCAATGGCATAATAGCAGCCCCTAATAATTACTCAAACTCACAGTCACAGATGAGTAACAATGATAATGAGAGGCCATCCAAGCTTCCCAAGAGCACCACCCCAACCCCAAGACGCAGAAGAACTGGCTCAGCTGGCACTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATTAGCCAACAGTTCATAGCACTTTCTGCCCTTATTCCAGGCCTAAAAAAGATGGACAAGGCGACGGTGTTAGGCGACGCTATCAAGTACGTGAAGCAGCTACAAGAGCAAGTGAAGGTTCTAGAAACTGAAAGCAAAAGGAAAAGCGCGGAGTCTGTTGTGTATGTTGAGAAATCTGAGGTGTGCGGAGAGGAAGATGTGTCTGTGTCAGACACTTGGTCAAATTCAGGGGGGGATGGAAACTCATCGTACGAAGTGTCAAAAGCAGTGAGTAGGTCGGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATCCGGATCCACTGCGAGAAACACAAAGGAGTGTTGATGCACATTCTCAAGCTCATTGACAAACTCCATCTCTCTGTTCTTAACACCACTTCCTTGCCTTTTGGAGCCTCCATCGTCGACATAACCATCACTGCCGAGATGGATGACAAGTTCAGCTTAAGCGCGAAGGAGCTTGCTAGAAACATAAGGGTGGGAGTGTTGCAATCGATGTAG 804 0.4776 MISTEESWTTWLCDLEEEDYSFINGIIAAPNNYSNSQSQMSNNDNERPSKLPKSTTPTPRRRRTGSAGTGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQEQVKVLETESKRKSAESVVYVEKSEVCGEEDVSVSDTWSNSGGDGNSSYEVSKAVSRSVLPEVEARVSEKNVLIRIHCEKHKGVLMHILKLIDKLHLSVLNTTSLPFGASIVDITITAEMDDKFSLSAKELARNIRVGVLQSM* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0496 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Amo05g0496 267 PANTHER BHLH TRANSCRIPTION FACTOR 58 264 - -
Amo05g0496 267 PANTHER BHLH TRANSCRIPTION FACTOR 3 42 - -
Amo05g0496 267 Coils Coil 113 140 - -
Amo05g0496 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 140 IPR036638 GO:0046983
Amo05g0496 267 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 42 - -
Amo05g0496 267 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 58 264 - -
Amo05g0496 267 Gene3D - 73 143 IPR036638 GO:0046983
Amo05g0496 267 MobiDBLite consensus disorder prediction 33 71 - -
Amo05g0496 267 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Amo05g0496 267 SMART finulus 80 129 IPR011598 GO:0046983
Amo05g0496 267 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0496 Amo-Chr5 5768985 5770525 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0496 60 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 45.894 8.03e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0496 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0496 - - ahf:112748090 472.241