Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0494 ATGGAGGAATTAAACGGATTGGCAACCAACTGGTTATCTGATCTGGATATAGATGATTACGAATTGTTTTCAGAGTGCAATTTGAAGAAGTTTCTGGATGAGGATGAAGAGAATCAGTTTGATGAGATGGTGATGAGTGCAGTGGTGGGGGAGGAGGAGGAAGAGGAGGAGGAGAGGCCAACTAAGCAACTCAGAACTTGCTCATCATCAAGCATCACTAACTACGTCTCATCTAATTCTTCTTCTTCTTCTTCTCCCACCTCCCAGATTCTGTCTTTTGAAAACTCTTACAACCCATCCTCCCAATTTTATGGCTTTGAATTTGATGCAACTCCTAATGATAAGGTTTCACCGCAACCACAAGTTGGTAATAACAATGATAAGAACAAGCTGGAACAAACAAGGAAACCTCAAAGCCAAGGGAGTAAGAGACAGGCGGCTCACTCTCACGATCACATCATGGCTGAGAGAAAGCGAAGGGAGAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCTTCGGTACTGGGAGATGCAATCAAGTACGTGAAAGAGCTTCAGGGGCGATTGAAGGTTCTAGAAGAAGAGAACAAGAGAGAGGTGGAGTCTGTGGTGATTGTGAAGAATCCACGCTTCATCACGAGCAGCAGCGACGATGACTCCTCTTCCTGTGATGATGACACCTTGGAAGCAGACGGCGAAGCAGCACTAGCACACGTGGAAGCAAGAGTGGCGGCGGCCGAGAAGGAGGTGCTGCTCCGGATCCATTGCAAGAAACAGAAGGGCATTTACGTCAAATTACTGTCGGAGATACAAAGCCTTCACCTGTACGTGGTCCATAGCAGTGTGCTACCGTTCGGGGATTCGGTTCTCGACATAACCATCGTTGCTCAGATGGGCACAGAATACAAGTTGAGCATAAGAGATCTTGTGAGGAATCTACGCGTGGCTACGCTGAAAACGATGTCGTCGTCATAG 1008 0.4692 MEELNGLATNWLSDLDIDDYELFSECNLKKFLDEDEENQFDEMVMSAVVGEEEEEEEERPTKQLRTCSSSSITNYVSSNSSSSSSPTSQILSFENSYNPSSQFYGFEFDATPNDKVSPQPQVGNNNDKNKLEQTRKPQSQGSKRQAAHSHDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQGRLKVLEEENKREVESVVIVKNPRFITSSSDDDSSSCDDDTLEADGEAALAHVEARVAAAEKEVLLRIHCKKQKGIYVKLLSEIQSLHLYVVHSSVLPFGDSVLDITIVAQMGTEYKLSIRDLVRNLRVATLKTMSSS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0494 335 PANTHER BHLH TRANSCRIPTION FACTOR 32 330 - -
Amo05g0494 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 210 IPR036638 GO:0046983
Amo05g0494 335 MobiDBLite consensus disorder prediction 145 159 - -
Amo05g0494 335 SMART finulus 153 202 IPR011598 GO:0046983
Amo05g0494 335 PANTHER TRANSCRIPTION FACTOR NAI1 32 330 - -
Amo05g0494 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Amo05g0494 335 Coils Coil 186 213 - -
Amo05g0494 335 MobiDBLite consensus disorder prediction 108 159 - -
Amo05g0494 335 MobiDBLite consensus disorder prediction 49 91 - -
Amo05g0494 335 Gene3D - 128 212 IPR036638 GO:0046983
Amo05g0494 335 MobiDBLite consensus disorder prediction 64 91 - -
Amo05g0494 335 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Amo05g0494 335 MobiDBLite consensus disorder prediction 114 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0494 Amo-Chr5 5754024 5756095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0494 7 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.176 5.71e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0494 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0494 - - adu:107487595 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0494 05 5754024 5756095 Amo01g1422 01 26734862 26740435 PCT
Amo05g0494 05 5754024 5756095 Amo11g0873 11 23345826 23351325 PCT
Amo01g1422 01 26734862 26740435 Amo05g0494 05 5754024 5756095 PCT
Amo11g0873 11 23345826 23351325 Amo05g0494 05 5754024 5756095 PCT