Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0488 ATGGCTGCAGAGATTGGGCTTCTCTCAATGAGCCAGATCCAAAAATTGTCACAATCCCAACAACAACAACAACAACAAAAACACAAAACGAAAAGCAGCAACAACAACCACCGCCACCACCACCCTCCTCCACCTCCTTCAAACCCTAACTCATCCATCACCACCACCACTTGGATGTGGAACCCTAGGGAACAGCACCAAGAAGATGACGACTCTTGGGAGGTCAGAGCCTTTGCAGAGGACACTAGGAACATCATGGGAACCACGTGGCCACCGAGGTCCTACACCTGCACCTTCTGCAGGAGGGAGTTCCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGAGATCGCGCTCGCCTCCACCACCACCAACCTCCTCTTCCTCCTCCTCCACCTCCTCCACCGCCTCCTCCTTCTCATCATCATCATCATCTTCATCAATATCCATCACCAGCAGCATTCATAAATGTCCCTCATCGTCATCATCAGGATCTGGTTTCAAATGCTACAGGGTTGTGCGTCTTCTATCATTTGCCACCAAGCCCTAATCGTACCACTCCCTTCGCTACTCCATCTCCGTCTCCATCCACTCTTCTCTCCATGACGTCATCTTCATCGTCATCTTATTACCCACAAAACAACTTGATGACGATGATGCAACCACTTTGCTCTCCCTCCCTTGACTTGCCATCCGGGATCAACGGCGTTTCTTCTTCTTCTCCAACTTACTCCACCAAAGTGATTGAAGAAGCCCTCGTTAACGACAATAATAACGGCCATCACCACCACCACCTTGAAGAGCTTGATCTAGAGCTGCGCTTGGGGCAAAAGCGACCACCAACTCGACCAAGCTAA 867 0.5156 MAAEIGLLSMSQIQKLSQSQQQQQQQKHKTKSSNNNHRHHHPPPPPSNPNSSITTTTWMWNPREQHQEDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQPPLPPPPPPPPPPPSHHHHHLHQYPSPAAFINVPHRHHQDLVSNATGLCVFYHLPPSPNRTTPFATPSPSPSTLLSMTSSSSSSYYPQNNLMTMMQPLCSPSLDLPSGINGVSSSSPTYSTKVIEEALVNDNNNGHHHHHLEELDLELRLGQKRPPTRPS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0488 288 MobiDBLite consensus disorder prediction 1 56 - -
Amo05g0488 288 MobiDBLite consensus disorder prediction 122 150 - -
Amo05g0488 288 SMART c2h2final6 95 117 IPR013087 -
Amo05g0488 288 MobiDBLite consensus disorder prediction 128 142 - -
Amo05g0488 288 Pfam C2H2-type zinc finger 95 119 - -
Amo05g0488 288 PANTHER OS07G0101800 PROTEIN 57 282 - -
Amo05g0488 288 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Amo05g0488 288 PANTHER OS07G0101800 PROTEIN 57 282 - -
Amo05g0488 288 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Amo05g0488 288 MobiDBLite consensus disorder prediction 10 30 - -
Amo05g0488 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0488 Amo-Chr5 5670174 5671040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0488 57 128 C2H2 Transcription Factor Family AT4G17810 73.333 1.76e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0488 - - adu:107487554 400.979