Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0485 ATGAGCAGCAGTGGCGGTTCTGGATCAAACTATTCAGGTGGTGAGCCACTGCCACCTCCTTCTCCAGGCATAGCATTAGGCTTCTCAAAGAGCACTTTCACATATGAGGAGTTGGCGCGAGCAACCAATGGCTTCTCCGACGCCAACCTCCTCGGATCAGGTGGATTCGGGTATGTGCATAGAGGAATTCTTCCCAACGGCAAGGAAGTGGCGGTGAAGCAGCTAAAGGCTGAAAGTGGGCAAAGAGAGCGTGAATTCCAAACTGAAGTAGAGATAATTAGTTGTAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACGTTGGAATTCCATTTACACGGCCGTTTTATCGTCAAGTGTTGTTTTTTGAGTTTTGGGATATTAGGTGTCGTTTTGATTATTAAAGAAACTGCAAACTACACACTTGACCTTAGCTAA 438 0.4566 MSSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATNGFSDANLLGSGGFGYVHRGILPNGKEVAVKQLKAESGQREREFQTEVEIISCRLLVYEFVPNNTLEFHLHGRFIVKCCFLSFGILGVVLIIKETANYTLDLS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0485 145 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Amo05g0485 145 SUPERFAMILY Protein kinase-like (PK-like) 21 116 IPR011009 -
Amo05g0485 145 ProSiteProfiles Protein kinase domain profile. 45 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0485 145 Gene3D Phosphorylase Kinase; domain 1 27 96 - -
Amo05g0485 145 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 1 115 - -
Amo05g0485 145 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0485 Amo-Chr5 5616150 5616640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0485 33 113 Trihelix Transcription Factor Family AT4G32710 61.616 3.36e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo05g0485 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0485 - - gmx:100781944 193.356