Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0484 ATGGCTGGTTTGGATTTAGGAACAGCTTCACGCTTCGTTCAAAACCTGCACAGACCAGAATTCAACCTGCATCACAACCATCATCATCAACAACAACATCATCATCATCATCATCACCAACAAGATTCTGAAGAAGACGCCAACAACAACCACCAAGATCACTATGAGGATGATGCTCCCCACGACCACACGGGTTTGGACCTCGCAACGGCCTCCGCGGGAGATGTCGTCGCACGCCGTCCTAGGGGTAGGCCGCCGGGATCCAAGAACAAGCCCAAGCCGCCGGTCATCATAACCAGGGAGAGCGCCAACACGCTCAGAGCACACATCCTCGAGGTAGCCAGCGGCTGCGACGTCTTTGACAGCGTCGCCACCTACGCCCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGTGGCAGCGGCACCGTCAATAACGTCACCATCAGGCAACCAGCCGCCGCCGGAGCAGTAGTCACGCTCCACGGCAGGTTCGAGATATTGTCCCTCTCCGGCTCGTTCCTTCCGCCGCCGGCTCCCCCCGGCGCCACCAGCCTAAGCATATACCTCGCCGGAGGTGTTGATCCAGCAATTTTTGCAACTGCGCGCCCCTTCATCATGATCATGAGTTTGCCTTTCTTGAATTTGAGAACTTTAGCTTGCCATTGA 666 0.5691 MAGLDLGTASRFVQNLHRPEFNLHHNHHHQQQHHHHHHHQQDSEEDANNNHQDHYEDDAPHDHTGLDLATASAGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGCDVFDSVATYARRRQRGICILSGSGTVNNVTIRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGVDPAIFATARPFIMIMSLPFLNLRTLACH* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0484 221 MobiDBLite consensus disorder prediction 25 97 - -
Amo05g0484 221 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 192 - -
Amo05g0484 221 ProSiteProfiles PPC domain profile profile. 103 221 IPR005175 -
Amo05g0484 221 Gene3D - 106 199 - -
Amo05g0484 221 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 192 IPR014476 GO:0003680
Amo05g0484 221 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 192 IPR005175 -
Amo05g0484 221 MobiDBLite consensus disorder prediction 37 64 - -
Amo05g0484 221 CDD DUF296 107 192 IPR005175 -
Amo05g0484 221 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0484 Amo-Chr5 5588264 5589464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0484 1 190 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 66.341 2.66e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0484 - - qsu:111992217 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0484 05 5588264 5589464 Amo01g1449 01 28856955 28857836 PCT
Amo01g1449 01 28856955 28857836 Amo05g0484 05 5588264 5589464 PCT