Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0482 ATGGATTCTCGGGAACCCCACCACCAACCTTCCCATCACCACCACCCTCACCACCACCACCACCAGCAACCACCACCTCCTCCCAACATGATGGTCGGCATGGGACCCACCCAATACTCTCCCTCCATGATGGCCCCCACCACCGCCCGATTTCCCTTTACCTCCGTCGTCCACCACCAGCATCAGCAGCACCAGCAACAACAACAGCAGCAACAGCAGCAGCACCACCAGCACCAGCACCAGCACCAGCACCAGCAGCCGCCCGTTCCACCCACCAACAACAACGGCAACGCCGCTAACGATAACAACAACACCGTCGCGCTTTACGACGGTTCCTCTTCCGCCCTTAAGCCCTGCGGATTCCCCACCACCGACTCCGCCTCCGCCGCCAAGAAGAAGAGGGGCCGACCCCGGAAGTACTCCCCAGACGGCAACATTGCCTTGGGACTCTCTACCACCCACGCCTCTCCCTCTCCCGCAGTACCACCACGCGCCGATTCCTCTGCCGGAGGTTCTGGTGGCGGTGGCGCAACCCCCTCATCGGAGCCTCTGGCCAAGAAGCACAGAGGGAGGCCTCCTGGCTCCGGCAAAAAGCAGATGGATGCGCTTGGAGCTGGTGGGATAGGTTTTACTCCGCACGTGATCTTAGTGGAGTCTGGTGAGGATGTTGCAGCTAAAATTATGGCCTTCTGCCAGCAAGGACCTCGGACTGTAGTCATTCTTTCGGCTAATGGTGCAATCTGTAATGTCACCCTTAAGCAGCCGACAACGTTGGGGGGTACTGTGACATACGAGGGCCGATTTGAAATTATATCTCTGTCGGGTTCTTTACTACATTCTGAAAATAATAGTGATCGAAGCAGACCGGGCGGCTTGAATGTCTCCCTTGCAGGTTCCGATGGACGAGTTTTAGGGGGTGGAGTTGCTGGAATGCTAACTGCAGCATCACCAGTACAGGTCATTGTGGGTAGCTTTATTGAAGATGGCAAAAAGTCAAATAGCTCAAGTAACAATAAATCAGGGCCTTCGTCAACGCCATCAACCCAAATGCTAAATTTTGGCGCTCCTATGACTCCAACCAGTCCTACCTCTCAGGGGGCTTCCTCGGAATCATCTGACGACAATGATCAGAGTCCTCCTAATAGGGGGCCTGGACTCTACAATAATGCTAGTCAGCCCATTCATAATATGTCGATGTACCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA 1236 0.5494 MDSREPHHQPSHHHHPHHHHHQQPPPPPNMMVGMGPTQYSPSMMAPTTARFPFTSVVHHQHQQHQQQQQQQQQQHHQHQHQHQHQQPPVPPTNNNGNAANDNNNTVALYDGSSSALKPCGFPTTDSASAAKKKRGRPRKYSPDGNIALGLSTTHASPSPAVPPRADSSAGGSGGGGATPSSEPLAKKHRGRPPGSGKKQMDALGAGGIGFTPHVILVESGEDVAAKIMAFCQQGPRTVVILSANGAICNVTLKQPTTLGGTVTYEGRFEIISLSGSLLHSENNSDRSRPGGLNVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIEDGKKSNSSSNNKSGPSSTPSTQMLNFGAPMTPTSPTSQGASSESSDDNDQSPPNRGPGLYNNASQPIHNMSMYHHQLWAGQTQQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0482 411 CDD DUF296 211 325 IPR005175 -
Amo05g0482 411 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 406 IPR039605 GO:0003680
Amo05g0482 411 ProSiteProfiles PPC domain profile profile. 206 348 IPR005175 -
Amo05g0482 411 MobiDBLite consensus disorder prediction 1 203 - -
Amo05g0482 411 Pfam Plants and Prokaryotes Conserved (PCC) domain 212 326 IPR005175 -
Amo05g0482 411 Gene3D - 212 339 - -
Amo05g0482 411 SUPERFAMILY AF0104/ALDC/Ptd012-like 210 327 - -
Amo05g0482 411 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Amo05g0482 411 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Amo05g0482 411 MobiDBLite consensus disorder prediction 328 392 - -
Amo05g0482 411 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 64 406 - -
Amo05g0482 411 MobiDBLite consensus disorder prediction 83 121 - -
Amo05g0482 411 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0482 Amo-Chr5 5568439 5573436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0482 130 411 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.363 2.15e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0482 - - ahf:112748027 410.223