Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0480 ATGCCACCAGTTCCACTTGCTCCCTACCCAACACCATCGGTTCCATATACTACGCCTCCATCAAATGGTGCACAGAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTACTGATGTATCCAGTTGGAGCCACGTCAGTGTGTTGTGCAGTTTGCAATGCAGTGACAGCAGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 447 0.4855 MPPVPLAPYPTPSVPYTTPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0480 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Amo05g0480 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Amo05g0480 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Amo05g0480 148 PANTHER PROTEIN LOL1 3 144 - -
Amo05g0480 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Amo05g0480 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Amo05g0480 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Amo05g0480 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Amo05g0480 148 PANTHER PROTEIN LSD1 3 144 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0480 Amo-Chr5 5556749 5559012 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Amo05g0480 zf-LSD1 8.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0480 - - mnt:21406053 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0480 05 5556749 5559012 Amo01g1473 01 29814515 29816826 PCT
Amo05g0480 05 5556749 5559012 Amo11g0858 11 20286034 20287743 PCT
Amo01g1473 01 29814515 29816826 Amo05g0480 05 5556749 5559012 PCT
Amo11g0858 11 20286034 20287743 Amo05g0480 05 5556749 5559012 PCT