Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0478 ATGCTGCTCCTGAAGCTAAAGATGCTCCAACTCAACCTTAACCTCACAAGCGCAAAGTTTTCATTCGCAAAACAGTCAGGATTGGTCGACAAAGCAAAATATCTAATTTTTCAGATTGAATATCCTGAGATTGAAGACCTAACAAAACCAAGTTACCGATTTATATCTTCTTATGAGCAGAAGGTGCAACCATTTGATAAAATATATCAATATCTTTTGTTTGCGGTTGAACCTTATGAAATCATTGCTTTCAAGGCCCCTAGAATGAAGTTTGATAAGTTTACACTAAATTTTTTCTTACACTATGACCCAAATTTAAAGATGTTCACGCTACAATTATATTTTAAATCCAAGTTATCACGGGCAAACAAACCACATCCCTCATCTATAGCGAATGGTGCAGCAGCACTCGGTGTTCCACCAAAGTCCATGCCTTTGCCACCTCAAGCTCCACACACGAAAGAGAGGAAAGATTTGAAAAAGAAAACCATGGCTAACAATGGTGGTGTCAAAAAAAAATAA 522 0.3716 MLLLKLKMLQLNLNLTSAKFSFAKQSGLVDKAKYLIFQIEYPEIEDLTKPSYRFISSYEQKVQPFDKIYQYLLFAVEPYEIIAFKAPRMKFDKFTLNFFLHYDPNLKMFTLQLYFKSKLSRANKPHPSSIANGAAALGVPPKSMPLPPQAPHTKERKDLKKKTMANNGGVKKK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0478 173 SMART CactinC_cactus_3 24 122 - -
Amo05g0478 173 MobiDBLite consensus disorder prediction 151 165 - -
Amo05g0478 173 Gene3D - 5 123 - -
Amo05g0478 173 MobiDBLite consensus disorder prediction 126 173 - -
Amo05g0478 173 PANTHER SPLICING FACTOR 3A SUBUNIT 2 19 153 - -
Amo05g0478 173 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 23 109 IPR031781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0478 Amo-Chr5 5532901 5533675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0478 33 133 C2H2 Transcription Factor Family AT2G32600 65.347 2.84e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0478 K12826 - gmx:100818114 179.104