Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0477 ATGAGGGCCAAAGACAAGCACACCCGAACCAATCGCAAACCTCGATCCTCGCCCAATCCTAATTCCAATTCGGATTCCTGCCATAATAAAACGGTGGCCACGCCCAATTCCAACCGAAACCCTAACATTCCTCCCTACAGCTGGGGTTTCTGCACCGAAGACGAGCTCCAAGAGCTTCTCTTGAGGAACATGGAGATCGTCTACGCTGACGTAGTTTCCAAGATCGTGTCCATGGGCTACAGCGAGGACCAAGCTCTCAAGGCGGTCCTCAACAATGGCCATTGTTTCGGCGGCGTCGATGCGCTGGAGAACATACTCAACAATTCCTTGGCTTATCTCAAAAGCAACGGCAATTTGGAGGGTAGCGATGACACTATGCCTGTTTTCACCGATTTGATGCAATTGGAGGCGTATTCTCTTGCTGCTATGGTGTGTCTCTTGCAGCAGTTGAGGCCCAATTTGACTAAGGGTGATGCATTGTGGTGTTTGCTAGTCACTGATTTTCATGTCGGAAAGGCTAGCACAATTCAGGTTCCGGTTGCAAACAATGAATGTACTTGTTGTTCTTCGCGTACTGCTACTACTACTGCTACTACTACTACCACCAACACTGGTGACAATGCAGTTGGTGTTGTGTCTCCATCTCCACATTTTTGTGAGTCTCGAGGGGGACCTCCGGATTTTAATTTGGTCTTCGCTTGCGGCCATGAGATGAGTTTGCGGTTGCAGAGAGATATTGAATTCCCAAAAAGGTTTAATCTTTCTCCTTCGATGAAGTCCTTGTTGAAAAGAAATGTTGCACTGTGCGCTGCTGGTTTTAAGGCTCACTCAAAACAGTTGCCGCAGCCACAAGCCGTAGCCATTCCCGCTGGTAGCACTGGGCCGGCAGAGGATGCTGTTACCTCCATGATGAATAAATTTCGCGAGCTAAATCTCGATGATTGTATGAAGCTTCTTGCAGAGGATCAGAAGGATGAGGTGTTACTTGCTCTGTTTAATCAGGTTAAGGATCTCGAGAAAGAGCTCAAGGTCCGAAAGGATTGGGCTCATGAGAGGGCAGTGCAAGCAGCTACAAAGCTGAGCAATGATATGGCTGAGTTGAAAATGTTGAGGATGGAAAGCCAAAGAGAGGAGGCTCAGAAGTTAAAGAAAGGCAAGCAAGCGCTCGACGACGCGACAATGAAGAAACTATTAGAGATGGAGGAGGCATTGAGGAAGACTAGTGGTGAAGTTGATCAGGCGAATTCAACTGTCAAAAAGTTAGAGACGGAGAATGCAGAAATTAGAGCAGAGTTGGAGGCTTCTAAATTGAGTGCATCAGAGTCTGTCAAAAACTGTACACAGGTTGAGAAAAGGGAGAAAAAGTGTTTAAAGAGGCTTCTTGCTTGGGAAAAACAGATAGCAAAGCTACAACAGGAGATTTCAGATGAAAAACAGAAGATAGTGGAGATTGAAAAAGAATTGGCTCGGATTAGACAGTGTCAGAAAGAAGCTGAGGTCAAGGTCAGGGAAGAGTTGAAGGCTAAAGAGGAAGCCCTGGTACTAATTGAGGAGGAACGCCATAGCAAGGAAGCAGCTGAGGTTGACAGTAAGAGAAATCTTAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAACGTCGCAAGGATGATCTCCTGAGGCTTGAGCAGGAGCTTTCATGCCTTAAAGTATCTTCTCGATCTGCTGATAAGCATCGGAAATCAAAAGCTTCACGGACAGGTAATTCTGATGTTGCAAAGCCCCAAAGGGAGACAATCACAAAGCTTCTTAAAGAATTAGACAATCTTGAGGATTTTGAAGAAGAAGTCAACGGTGCTAGAGAATGTATCATATGCAAGGGAGACGAAGTTTCAATTGTTTTCTTGCCGTGTGCACACCAAATTATGTGTGGTAGCTGCAGCCAGGAGTATGGGAGGAAGGGCAAAGCTACCTGTCCCTGCTGCCGGGTTCCAATTGAACAGAGAATCCGTGTGTTCGGTGCAGGTTCTTAA 2013 0.4625 MRAKDKHTRTNRKPRSSPNPNSNSDSCHNKTVATPNSNRNPNIPPYSWGFCTEDELQELLLRNMEIVYADVVSKIVSMGYSEDQALKAVLNNGHCFGGVDALENILNNSLAYLKSNGNLEGSDDTMPVFTDLMQLEAYSLAAMVCLLQQLRPNLTKGDALWCLLVTDFHVGKASTIQVPVANNECTCCSSRTATTTATTTTTNTGDNAVGVVSPSPHFCESRGGPPDFNLVFACGHEMSLRLQRDIEFPKRFNLSPSMKSLLKRNVALCAAGFKAHSKQLPQPQAVAIPAGSTGPAEDAVTSMMNKFRELNLDDCMKLLAEDQKDEVLLALFNQVKDLEKELKVRKDWAHERAVQAATKLSNDMAELKMLRMESQREEAQKLKKGKQALDDATMKKLLEMEEALRKTSGEVDQANSTVKKLETENAEIRAELEASKLSASESVKNCTQVEKREKKCLKRLLAWEKQIAKLQQEISDEKQKIVEIEKELARIRQCQKEAEVKVREELKAKEEALVLIEEERHSKEAAEVDSKRNLKALRLKIEIDFQRRKDDLLRLEQELSCLKVSSRSADKHRKSKASRTGNSDVAKPQRETITKLLKELDNLEDFEEEVNGARECIICKGDEVSIVFLPCAHQIMCGSCSQEYGRKGKATCPCCRVPIEQRIRVFGAGS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0477 670 Coils Coil 357 392 - -
Amo05g0477 670 Coils Coil 397 438 - -
Amo05g0477 670 MobiDBLite consensus disorder prediction 1 40 - -
Amo05g0477 670 MobiDBLite consensus disorder prediction 14 40 - -
Amo05g0477 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 667 IPR013083 -
Amo05g0477 670 Coils Coil 453 519 - -
Amo05g0477 670 Pfam Zinc finger, C3HC4 type (RING finger) 614 661 - -
Amo05g0477 670 Pfam Family of unknown function (DUF6592) 64 173 IPR046527 -
Amo05g0477 670 SUPERFAMILY RING/U-box 595 662 - -
Amo05g0477 670 ProSiteProfiles Zinc finger RING-type profile. 616 656 IPR001841 -
Amo05g0477 670 PANTHER OS05G0141500 PROTEIN 2 668 IPR046934 -
Amo05g0477 670 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0477 Amo-Chr5 5528012 5531079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0477 604 666 C3H Transcription Factor Family AT1G73950 34.921 7.22e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0477 - - adu:107487583 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0477 05 5528012 5531079 Amo01g1494 01 30604133 30610606 PCT
Amo05g0477 05 5528012 5531079 Amo11g1067 11 31654140 31660607 PCT
Amo01g1494 01 30604133 30610606 Amo05g0477 05 5528012 5531079 PCT
Amo11g1067 11 31654140 31660607 Amo05g0477 05 5528012 5531079 PCT