Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0475 ATGGGAGGGGCATCACTGCCTCCGGGTTTTCGTTTCCACCCTACTGATGAAGAACTGATAGGATACTACCTGAAAAGAAAAGTTGAGGAGCTTGAAATTGAACTTGAAGTTATCCCTGTGATTGATTTGTACAAGTTTGATCCTTGGGAGTTGCCGGAGAAGTCATTCTTACCAAAAAGAGACTTGGAATGGTTCTTCTTTTGTCCAAGGGATCGAAAGTATCCGAATGGATCAAGAACAAACAGAGCTACCAAAGCAGGATACTGGAAAGCCACTGGAAAAGACAAAAAGGTTGTGTGCCAATCTAGTCCATCAACATCAATCATGAAAGCCACCGGATATCGCAAGACCCTTGTTTTCTATCGCGGAAGAGCCCCTTTAGGCGACCGAACGGATTGGGTTATGCACGAGTATCGCCTCTGTGATGATCTTGGCCAAGACTCACCAAGTTTTCAGGGTGCTTATGCTTTGTGCCGGGTTATTAAGAAGAATGACAAGGCCAGTGATTACAAGGGTAAAAGAGGTGTCAGCAGTTCCAAGAATGAGAATGAGAATGAGAATGAGAGCTCAATGAGATTGTCATCCTCTAAGGAGCACTTGAGCATCTCTGCTGATGTTTCTTCTCAAGCAAGTCAGCTATGCAGCGAGAGTCGTTATTCGAGCCCTATAGCTTCTCCTTGTGCATACAATGTGGCTGCAACGGCCGGGTTTGAGCCACCTTCTGTGGACACTAATCCTTCAACCTTCTTGGTCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTTTGCTCAAACACAAGATGTTATTTCAGGATTCTTTCCGCATCATGAATTGCCAAGTACAATGACACCATGGCAATCATTGGAACATACAGAGATTTCATCCAGTTCATCCTACTCAAATTTCAATGGGGAGATAGAATTCTCTGATGAACTCGGCCTAATTGGCCGAATGTCGCGTTACTCAGGACAAGTAGACATGTTAGACTTCTATGGAAATGAGGAAGTGCTGTATGAATATGAAGGATATGACCAGATCAATTCAATCAGAGATCCAAGACAATTCTGA 1071 0.437 MGGASLPPGFRFHPTDEELIGYYLKRKVEELEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQSSPSTSIMKATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDLGQDSPSFQGAYALCRVIKKNDKASDYKGKRGVSSSKNENENENESSMRLSSSKEHLSISADVSSQASQLCSESRYSSPIASPCAYNVAATAGFEPPSVDTNPSTFLVSPDMILDSSKDFAQTQDVISGFFPHHELPSTMTPWQSLEHTEISSSSSYSNFNGEIEFSDELGLIGRMSRYSGQVDMLDFYGNEEVLYEYEGYDQINSIRDPRQF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0475 356 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
Amo05g0475 356 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Amo05g0475 356 MobiDBLite consensus disorder prediction 169 193 - -
Amo05g0475 356 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 356 - -
Amo05g0475 356 MobiDBLite consensus disorder prediction 169 198 - -
Amo05g0475 356 Gene3D NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Amo05g0475 356 ProSiteProfiles NAC domain profile. 6 163 IPR003441 GO:0003677|GO:0006355
Amo05g0475 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0475 Amo-Chr5 5519277 5521787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0475 1 314 NAC Transcription Factor Family AT4G17980 54.114 2.09e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g0475 NAM 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0475 - - adu:107487585 690.649