Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0472 ATGGGAAGAACCTCCTCACTCTGCAACCTCTTCTCTTGCTTCGCACCACCCTCCACCAACGACCACCACCAACAACCACCCGAGCTCGCATTCCAAGAAACCGAACCGCTAGACGAAACCCTAGGTCACTCATTCTGCTACGTCAGATCCTCAAATCGCTTCGTCTCTTCTCCCACTCACTCACCCTCTCATTCCGATCGCTTCCTCTCTTCCCCTTCCGCCTCCCTCCGCTTCTCCCCAACCCACACCGAACCCGTTTTCAAGTCCATTTCCGGTGCCTCCGTTAGCGCCAACAGCTCCGCTCCCAAAACCGTTCTCCAATTTGACGCTGATGCCGCAGCTGGTTTCCCTCCCAGGGGCAGTATCGTAAATGGATTCGAAGCCACGTCGTCGTTTAGCGCACTCCCGCTTCAGCCAGCTCCCAGAGGCAATGGTGAGCCTTCTGGAAGGGCTTTCTTCCTCTCCGGTCCAATCGAGAGCGGAGCTATGTCTGGTCCACTTGACGCCGGCGCCGCCGCGGAAGGGGGAGGACCCGCCTCCAGCGCCGGTGTTCCTTTCTCGGCGCCGCTGGGCGGGTTGTACGCCAAGAAGAAGCGGAAGAAGGGGATCCCCGGGCTTAGGAAGGCGTTCCATCGGAGAAGCCTCTCGGAGATGAAGCGGCCTTGGGTGGTGCCCGTGCTGAACTTCGTCGGGAGGAAGGAAGATCCGCCGGAGACTGAAGGAGGGAGCGGGGCTGCAGCGCCGGAGGTGGGGAAGGGCGAGAGCAATGTGCAGTGGGCGCTGGGGAAGGCAGGGGAGGATCGCGTGCACGTGGTGGTGTCGGAGGAGCAGGGTTGGTTGTTCGTGGGGATCTACGACGGCTTCAACGGCCCCGACGCGCCGGAGTTCTTAATGGGTCACCTCTACCGTGCTGTTCACAGTGAGCTTCAGGGGTTGTTTTGGGAAGTCGAAGAAGAAGAAAAAGCAGTGGAAACTAACCCCTCGAGTGAACCTGCATCTGCACCTGCAGCTGAATCGTCAATGGCTGCTGAAGAAGATTTCAAGGACGACGGAGGGTCAGCAAAGAGAGTGACATTTCAGGTGGAGGGAACGGAGAGCAGGCGGCGCAGGCTGTGGGAGCTTCTTGCGGAGGATGCTGCTGAAGATGGGCTTGATCTTTCGGGTTCGGACAGGTTTGCATTTTCGGTTGATGATGCACTCAGCGTGAGCAAGGAGGGCTCATCAGGTAGTAGAAGGTGGATGGTGTTGTCAAAATTGAAGCATGGATTGTCAAAGCACAAGGAGGGCCGTGGGGGGAAGTTGTTACCTTGGAACTTGGCTACGGAAGATAAAGAGAAGGTTGAAGTGGAAACCCGGGCAGAAGAGAAATCTCATGGTGGGGATGGCACTGGCAATGGCAATGGTGGTGGTAGAAGACGGAAAGTGGGTCCAGTGGATCATGATCTGGTTTTGAGGGCATTGTCTCGGGCACTTGAGATGACAGAACTTGCATATTTGGATATGACGGATAAAGTTATCGATACAAATCCGGAGCTTGCTCTAATGGGGTCTTGCCTTCTAGTTGCTTTGATGAGGGGCGAGGATGTGTATGTGATGAACGTGGGTGATAGCAGGGCCATTGTTGCTCAGTATGAGCCCATAGAAGTTGGTTGTAGCAAGGAATCCGGAAGTCATGGGGATGTTGGGTCAGGTGCAGAGAGCATTACAGAGGAGTCTTCATTAGGCCAAGGTGAACGTGCCATCAGGTCGGGGAAGGAGGGTCCTGCTCAGGAAATGAGGTTGGTGGCATTGCAATTGTCCACTGACCACAGCACGAGTGTTGAAGAGGAAATCATTAGGATCAAGAATGAACATCCTGATGATAGCCACTGTATTGTAAATGATAGAGTGAAAGGCCGTCTTAAGGTCACCAGAGCGTTTGGGGCAGGATTTTTGAAACAGCCAAAATTCAATGATGCAGTACTAGAAATGTTTCGAAATGAATATATTGGAACTGCTCCATATGTATCCTGCTGCCCTTCATTACGTCATCATAGATTATGCCCTAGAGATCAGTTCTTGATCCTCTCATCTGATGGGTTATATCAATATCTAAGCAATCAAGAAGTGGTTTCTCAAGTGGAGAGCTTCATGGAAAAGTTTCCTGATGGAGATCCTGCCCAACATTTGATTGAGGAGCTGCTTGTCCGTGCAGCCAAAAAGGCTGGAATGGATTTTCATGAGTTGCTGGATATCCCTCAAGGAGATCGGAGGAAGTACCATGATGATGTTACTGTTATGGTGATATCACTCGAAGGAAGAATCTGGAAGTCATCAGGGAAGTACCCGTGA 2331 0.529 MGRTSSLCNLFSCFAPPSTNDHHQQPPELAFQETEPLDETLGHSFCYVRSSNRFVSSPTHSPSHSDRFLSSPSASLRFSPTHTEPVFKSISGASVSANSSAPKTVLQFDADAAAGFPPRGSIVNGFEATSSFSALPLQPAPRGNGEPSGRAFFLSGPIESGAMSGPLDAGAAAEGGGPASSAGVPFSAPLGGLYAKKKRKKGIPGLRKAFHRRSLSEMKRPWVVPVLNFVGRKEDPPETEGGSGAAAPEVGKGESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGHLYRAVHSELQGLFWEVEEEEKAVETNPSSEPASAPAAESSMAAEEDFKDDGGSAKRVTFQVEGTESRRRRLWELLAEDAAEDGLDLSGSDRFAFSVDDALSVSKEGSSGSRRWMVLSKLKHGLSKHKEGRGGKLLPWNLATEDKEKVEVETRAEEKSHGGDGTGNGNGGGRRRKVGPVDHDLVLRALSRALEMTELAYLDMTDKVIDTNPELALMGSCLLVALMRGEDVYVMNVGDSRAIVAQYEPIEVGCSKESGSHGDVGSGAESITEESSLGQGERAIRSGKEGPAQEMRLVALQLSTDHSTSVEEEIIRIKNEHPDDSHCIVNDRVKGRLKVTRAFGAGFLKQPKFNDAVLEMFRNEYIGTAPYVSCCPSLRHHRLCPRDQFLILSSDGLYQYLSNQEVVSQVESFMEKFPDGDPAQHLIEELLVRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0472 776 Pfam Protein phosphatase 2C 488 547 IPR001932 -
Amo05g0472 776 Pfam Protein phosphatase 2C 598 729 IPR001932 -
Amo05g0472 776 MobiDBLite consensus disorder prediction 448 476 - -
Amo05g0472 776 MobiDBLite consensus disorder prediction 342 360 - -
Amo05g0472 776 SUPERFAMILY PP2C-like 263 765 IPR036457 -
Amo05g0472 776 MobiDBLite consensus disorder prediction 553 587 - -
Amo05g0472 776 SMART PP2C_4 250 762 IPR001932 -
Amo05g0472 776 CDD PP2Cc 479 764 IPR001932 -
Amo05g0472 776 ProSiteProfiles PPM-type phosphatase domain profile. 249 764 IPR001932 -
Amo05g0472 776 PANTHER PROTEIN PHOSPHATASE 2C 23 774 IPR015655 GO:0004722|GO:0006470
Amo05g0472 776 PANTHER PROTEIN PHOSPHATASE 2C 29 23 774 - -
Amo05g0472 776 Gene3D - 248 771 IPR036457 -
Amo05g0472 776 MobiDBLite consensus disorder prediction 318 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0472 Amo-Chr5 5505872 5510281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0472 35 775 PP2C-type Phosphatase Gene Family AT2G35350 58.207 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0472 - - gmx:100775371 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0472 05 5505872 5510281 Amo01g1500 01 30942228 30947545 PCT
Amo05g0472 05 5505872 5510281 Amo11g1077 11 32110504 32115822 PCT
Amo01g1500 01 30942228 30947545 Amo05g0472 05 5505872 5510281 PCT
Amo11g1077 11 32110504 32115822 Amo05g0472 05 5505872 5510281 PCT