Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0457 ATGATACTTAAACTGAACCTTGTTTTGGTTGATGATCTTCTTCTTCAGACTTCAGAGGGCATGGGATTGAGTGATGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACATGGTTGGAAGGACTTTCCAAAGGGTCTTAGGGTTCTTCTCCTTGAAAGAGACAGCACTTCTGCTTCTGAGATAAGAGCCAAACTTGAGGCCATGGACTATCACGTTTCTACCTTCTACGATGAGAATGAAGCATTGTCAGAAATTTCAAATAGGCTCGAAGGATTCCATGTGGCCATTGTGGAGGTGAGTACAAGTAGCAGCCAGAGAGGCTTTAAATTTCTTGAGAGTGCCAAGGACTTGCCAACCATCATGACTTCAGATACTCAGTGCTTGAGCACTATGATGAAGTGCATTGCGCTTGGCGCTGTTGAGTTCCTATGTAAACCACTCTCTGAGGACAAACTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAATGCTGGGGCAAGTGTCTTGTCCGAATCACTAAAACCGGTTAAAGAGTCTGTAGAATCCATGTTGCAGCTGCAAACAGAAAATGGACATCATGAGAGTAAAATTTCCATTGATTTAGAGAATATATCAAGGTTTAGTGATAATTACCATGAGCAGTCTGCCGGAAGTGATAAATATCCGGCTCCTTCGACGCCTCAATTAAAACAGGGAGCAAGGTTACTGGATGATGGTGATTGCCAAGAGCATACAAATTGCTCGAATGAAAAAGAAAGTGGGGAACATGAAGGGGAATCTAAATCTGTTGAAGCATCAAGTGAGAATTTGAATGAAGGTACTCAACCACAGAAACCTGAAAAAGAGACTCTAATTAAACAGGAAGAGGATTTTGTTGCTGATGGTTCCAATGGTGAAAGTACTGTTCCTTTGAATCCTCATGATAGAAGGTCTCTTAGAAGCACCAATGGAAATATAACATCTCCAAATAAAGCAGTGGTCCTTAGTGATACATGTCAAAACAAAGCTAACCGGAAGAAGTTGAAAGTAGACTGGACTCCTGCATTGCACAAAAAGTTTGTGCAGGCAGTGGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGCGTACTGGAGCTGATGAAAGTGGAGGGCTTGACTAGGCATAATGTGGCAAGCCATCTTCAGAAATACAGACTACATAAGAGGCAAATGATGCCCAAGGAAGAAGATCGAAGATGGCAAAATCAAAGAGATACGGTGCGCTGGAAAAGGCCAGTTATGGCCTATCCTCCACATCATTATAATCATGGCCTGTCTCCACCTCCTGTATATCCAATGTGGGGACAATCCGGAACTCAAACAACCGGTGCACAGTTTTGGGGACCTCCTGGTTATACCTGGTTGCAGCCTACAGAAAATTGGCACTGGAAGCCTTTTCCAGGGGTGCATGTGGATGCATGGGGTTGTCCAGTGTTGCCAGCTACTCAAGCTCCTTACCTTTCTTACACTCAAGCAGATGAAGTTGTTGACAAAGTTGTAAAGGAAGCAATAAGCAAGCCGTGGCTACCGTTACCCTTGGGCCTCAAGCCTCCTTCCACGGACAGCGTGTTGGCCGAGCTCTCCAGGCAAGGCATATCCCCCATCCCTCTTGACTCTAAGGGCTCTAAACCCTGCTGA 1671 0.4452 MILKLNLVLVDDLLLQTSEGMGLSDDAKPAMVCTANDLHGWKDFPKGLRVLLLERDSTSASEIRAKLEAMDYHVSTFYDENEALSEISNRLEGFHVAIVEVSTSSSQRGFKFLESAKDLPTIMTSDTQCLSTMMKCIALGAVEFLCKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVESMLQLQTENGHHESKISIDLENISRFSDNYHEQSAGSDKYPAPSTPQLKQGARLLDDGDCQEHTNCSNEKESGEHEGESKSVEASSENLNEGTQPQKPEKETLIKQEEDFVADGSNGESTVPLNPHDRRSLRSTNGNITSPNKAVVLSDTCQNKANRKKLKVDWTPALHKKFVQAVEQLGIDQAIPSRVLELMKVEGLTRHNVASHLQKYRLHKRQMMPKEEDRRWQNQRDTVRWKRPVMAYPPHHYNHGLSPPPVYPMWGQSGTQTTGAQFWGPPGYTWLQPTENWHWKPFPGVHVDAWGCPVLPATQAPYLSYTQADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISPIPLDSKGSKPC* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0457 556 Gene3D - 44 165 - -
Amo05g0457 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 31 554 - -
Amo05g0457 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 344 399 IPR006447 GO:0003677
Amo05g0457 556 PANTHER TRANSCRIPTION ACTIVATOR GLK1 31 554 IPR044825 GO:0003700|GO:0045893
Amo05g0457 556 MobiDBLite consensus disorder prediction 283 297 - -
Amo05g0457 556 Gene3D - 340 402 - -
Amo05g0457 556 SUPERFAMILY CheY-like 46 164 IPR011006 -
Amo05g0457 556 MobiDBLite consensus disorder prediction 215 229 - -
Amo05g0457 556 MobiDBLite consensus disorder prediction 240 267 - -
Amo05g0457 556 ProSiteProfiles Response regulatory domain profile. 49 162 IPR001789 GO:0000160
Amo05g0457 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 341 400 IPR017930 -
Amo05g0457 556 SUPERFAMILY Homeodomain-like 343 401 IPR009057 -
Amo05g0457 556 MobiDBLite consensus disorder prediction 215 327 - -
Amo05g0457 556 MobiDBLite consensus disorder prediction 302 327 - -
Amo05g0457 556 Pfam Myb-like DNA-binding domain 347 396 IPR001005 -
Amo05g0457 556 MobiDBLite consensus disorder prediction 268 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0457 Amo-Chr5 5336605 5342828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0457 31 550 Response Regulator Gene Family AT4G18020 48.161 4.92e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo05g0457 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0457 - - gmx:100784905 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0457 05 5336605 5342828 Amo01g1529 01 31908112 31914310 PCT
Amo05g0457 05 5336605 5342828 Amo11g1098 11 32980656 32992464 PCT
Amo01g1529 01 31908112 31914310 Amo05g0457 05 5336605 5342828 PCT
Amo11g1098 11 32980656 32992464 Amo05g0457 05 5336605 5342828 PCT