Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0450 ATGGCGCTCCATATTTTGTGTGGATTTTTTCTTACCACCTTTGTTTTCATGCAAACACTGGCAGATACTTCTTCATCGTGCACCGATTGCTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAACGGTGCATGCGGCTTTGGTTCCTTTGGTGCTATGGTGAATGGCGGCGACGTATCTGCCGCTTCTAGTCTTTATCGAAATGGCGTTGGATGTGGCGCCTGTTACCAGGTGAGGTGTACGGAGAGTGGTTATTGCTCAGATAACGGTGTGACAGTGGTTATAACAGACGAAGGGTCAAGTGATAACACTGATTTCATTCTCACCGAACATGCCTTTGATCGTATGGCTCAGACCACTGATGCAGCAGCTTATCTCTTAGCCCTTGGCGTTCTTGATATTCAGTATACACGGGTTGCATGCAATTATCCACATGAGAACATAACATTCAAGATAGATGAGAGTAGCAGTAACCCTAATTACTTGGCATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTGCTGTCCAGCTTTGTGAGAGTGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGCCATGGTGCAGTGTGGACTAGCACCTCTCCTCCAAGTGGACCATTGTCTATAAGGATGTTGTTTAGTGATGAAGATGAACAAAATGAAGAATGGATTGTTCCTCCTAATAACTTACCCGCAGATTGGAAGCCTGGTCAAATATATGACTCTGGGATACAAGTTAGCTTTTAA 774 0.4406 MALHILCGFFLTTFVFMQTLADTSSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGAMVNGGDVSAASSLYRNGVGCGACYQVRCTESGYCSDNGVTVVITDEGSSDNTDFILTEHAFDRMAQTTDAAAYLLALGVLDIQYTRVACNYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCESENFECKLLDRSHGAVWTSTSPPSGPLSIRMLFSDEDEQNEEWIVPPNNLPADWKPGQIYDSGIQVSF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0450 257 SUPERFAMILY PHL pollen allergen 154 251 IPR036749 -
Amo05g0450 257 Gene3D - 151 255 IPR036749 -
Amo05g0450 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Amo05g0450 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Amo05g0450 257 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Amo05g0450 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Amo05g0450 257 Pfam Expansin C-terminal domain 155 225 IPR007117 -
Amo05g0450 257 PANTHER EXPANSIN-LIKE B1 8 255 - -
Amo05g0450 257 Gene3D - 15 149 IPR036908 -
Amo05g0450 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Amo05g0450 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Amo05g0450 257 SUPERFAMILY Barwin-like endoglucanases 25 152 IPR036908 -
Amo05g0450 257 PANTHER EXPANSIN-B3 8 255 - -
Amo05g0450 257 Pfam Lytic transglycolase 69 143 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0450 Amo-Chr5 5290481 5292763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0450 4 256 Expansin Gene Family AT4G17030 41.732 2.32e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0450 - - ccaj:109799868 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0450 05 5290481 5292763 Amo01g1544 01 32489087 32490391 PCT
Amo01g1544 01 32489087 32490391 Amo05g0450 05 5290481 5292763 PCT