Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0434 ATGCATTCCAACACTATTCCTGTTGCCTCCAGAACTCGTTCAAGAAAGACCGCCACAACCACCATGAGCCTGAGTAGCTCCGACGATGACGAAGTCGTCGTTAAAGGGGAAACTCCCCCGAAACCTCAACCTGAACGCGGCAGCGCAGAAGGCAGCGGTAACAGAGACGGCGAGAATGTGAAGGAGGGCGAGAACAGAGAAGATATAACGAGGAAAAGAAGAAAATTTGGGGTTGACATTTTGATTGACCAGGGTCCCATCCCCGATGGTAAGAGTGTTGCACACAGGACTCGTTCCCATTTCCCGAAGAGCAAGAAGCACCTCCTTTTTGGGACTTTTAGTCAACCAATTTGTCTTGCTGATGATGATGATGATGAAGAACAAGAACAAGAACAAGAAAAGGAAGAAGGGCAAGAACCTGGGAAGCAAGGTGAAGATGATGAAGAAGAACATGTGGAGGAGGAGGAGGAGGAGGAGGAAGACGACGACGACGACAACGACGACGATGACGACGAGTCTCTTTATGAATCAGAAGAAACTGATTTGGAGGAGGAGGATGATGATGATGACGACGACTACAGCGTAGAGAGAGATGCATGTATGAACAATGTGGCCAATTTCGAAGGGAAGAAGCAAAAGCGGAAGCGTGTTGATGTGGCTAGCATGTTAAGGGATATGATGTTTGGCAAGGGAGAGGTGCCTTTGCTGGAATCTGTGGAAGAAGAATCAGGTGCAACTGTGGTGACCATGGACGTGCCAACAAGGTCCCCTTTCAACAGTGAGAAGCACGCGCCACCGGAGAAATCGACTGAGCAGGAAGTGCTGGATGCTATTTGGGCTGAGATGGAGCGTGGCTTCAGCTCTGATCCTTTTGAAGAGGAGCAGGGTTCTAATGAATTCAAATGCAGAGGTTCCAAGAGGGAAAAGGGATCTGCTTTTGAATTTACAAGGAAGAGAGAAGATCAAGATCTAAAAGGGTTTGGTGGGGAGTTTCAGGATTGTGTTGCCCAAGAGAAGGGTAAATTGTCTAGCAAGTCAAGCATTGAGGGGGGAAATTCATGTGTGGATTTTCCTTTCAAGTTTACTTTTTTAACTAAGGAACCGCCAGCGGAGAAATCCCAAGATGAGAAAGAAATAGATACGATCTGGTCTGAGATGGAGCTTGGTCTTCATGTTATCCAACAAGACTCTGCTTCTGCTCCTCAGGGTGAAAATAATGCTAATTCGGATCGTGATCAATTTCCGGTGGAAGGTGATGCTAACACACCCCCTCTTTTTCGCTGTCAAAAAGGGGAACACAATCTTGTTCTTGATGAGGAAATTGGGCTTATCTGTAAATATTGCTTGCATGTGGCACTGGAGATCAAGAATTGGGTTCCTCCTTTTGTTGAAAGTCCATGGGAAAAATCTGACAGGAGAGATTATTATTATTATGGGGATGATGTTGACCGGTCTGTCTTGGATGAGCTTCATGATCGAACTTCTTGGAGTGATGATTATAACCTTGGTAATCACAAGGGGACAGTGTGGGATATGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAATGCGAAGCTTTTGAATTTCTCTGGAGTCATTTAGCTGGTGGAATTTTTCTTGATCAGCTTAAAGAAGAAAACACTGGAAATGGATGCGTTGTATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGGCTTACATGAAGTTATATCCAGCATGCTCACCAATGATTATTGCTCCTAAAAGCATGCTCCTTACATGGGAAGAGGAGTTCAAACTATGGAAGGTTGACATTCCCTTTCACAATGTGAACAACTCTGAATACTCTGGCAACGAGAATGAAACAGCTCGTAATCTTATCAATAAATTTGGTCGTAATGCTTCAACTCAGGCAGCAAAGCGGAATTGTCGTACAGCTAAGTTCTATTCCTGGAAGCTTGGCAAAAGCATCTTGGGAATTAGCTACAAATTGTTCGAGCTACTTACCCGGCAGGGCTCCCGGGACAAGGTCCTGAGGAAGTTCCTTCTTGAACAGCCTAGTTTGCTAGTTCTTGACGAAGGGCACACTCCCCGCAATAAGACATCTGCTGTATGGAAATCCGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTTCCGGAACTCCCTTTCAAAACAACTTTAGGGAGCTATACACCACACTGTGCTTGGCAAGGCCTAAATTTGCTGACTTGAATCCAAGAGATGAACATAGAGGGAGATGGCAATATCTTGTCAATTCATATGGAAAGGTTACTGATTCCAGTAGAAAATTAAAGATATTGAAAGAGATCCGAGAAATGATTCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGACAGTCTCCCAGGGTTGAGGCAGTTGGTAGTCATATTGAAGCCAACCCAGTTGCAGGAGAAATTGCTTCAAGATATTAAGAAGAGATTTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAGCAGCGTTTCATCCTTCTCTTTGCGAGATAGCTGAAGACAAGGAGAAGATACAAAAGTGTAGATTGAACCCCAACGAAAGTGCCAAAACAAAGTTCTTAATGGAACTTATCAGGATCAGTGGAATTTTCAATGAAAAAGTTTTGATTTTTAGTCAATTCATTGAACCTTTGAAGCTTCTACTGAGCCAGCTGAAGCAACATTTTAGTTGGACCGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGACAGGCTTCAATCCACACTTTCAATGATCCGAACAGCAAAGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTACGAAGGTATCAGTTTGGTAGGTGCCTCGAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAAGCAAGCAATAAGCCGTGCTTATAGGCTCGGCCAAAAGAAGCTTGTGTTTACTTACCATTTGATCACTAAGGGGACAACGGACGAGAAAAAATGTGGTCGACAAGCTGTGAAGGACCAGTTGTCAGAGTTCGTGTTCTTTCATTCCGAAGGTGGGGCTCAAAATCGTCAACTCTTTTCATCCGCTGAATTGGAAGATAAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTCAGACACATAATTGAAAAAGTAGCTATTAAGAAACCAAATCTACTTTGA 3204 0.4373 MHSNTIPVASRTRSRKTATTTMSLSSSDDDEVVVKGETPPKPQPERGSAEGSGNRDGENVKEGENREDITRKRRKFGVDILIDQGPIPDGKSVAHRTRSHFPKSKKHLLFGTFSQPICLADDDDDEEQEQEQEKEEGQEPGKQGEDDEEEHVEEEEEEEEDDDDDNDDDDDESLYESEETDLEEEDDDDDDDYSVERDACMNNVANFEGKKQKRKRVDVASMLRDMMFGKGEVPLLESVEEESGATVVTMDVPTRSPFNSEKHAPPEKSTEQEVLDAIWAEMERGFSSDPFEEEQGSNEFKCRGSKREKGSAFEFTRKREDQDLKGFGGEFQDCVAQEKGKLSSKSSIEGGNSCVDFPFKFTFLTKEPPAEKSQDEKEIDTIWSEMELGLHVIQQDSASAPQGENNANSDRDQFPVEGDANTPPLFRCQKGEHNLVLDEEIGLICKYCLHVALEIKNWVPPFVESPWEKSDRRDYYYYGDDVDRSVLDELHDRTSWSDDYNLGNHKGTVWDMIPGVKKTMYPHQCEAFEFLWSHLAGGIFLDQLKEENTGNGCVVSHAPGTGKTRLAIVFIQAYMKLYPACSPMIIAPKSMLLTWEEEFKLWKVDIPFHNVNNSEYSGNENETARNLINKFGRNASTQAAKRNCRTAKFYSWKLGKSILGISYKLFELLTRQGSRDKVLRKFLLEQPSLLVLDEGHTPRNKTSAVWKSVSEIETKRRIILSGTPFQNNFRELYTTLCLARPKFADLNPRDEHRGRWQYLVNSYGKVTDSSRKLKILKEIREMIQPFVHVYKGTILQDSLPGLRQLVVILKPTQLQEKLLQDIKKRFDNVLKLEYEESVAAFHPSLCEIAEDKEKIQKCRLNPNESAKTKFLMELIRISGIFNEKVLIFSQFIEPLKLLLSQLKQHFSWTEGREVLQMHGKQEAKLRQASIHTFNDPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVEKQAISRAYRLGQKKLVFTYHLITKGTTDEKKCGRQAVKDQLSEFVFFHSEGGAQNRQLFSSAELEDKILEQIIEQEKFRHIIEKVAIKKPNLL* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0434 1067 MobiDBLite consensus disorder prediction 146 195 - -
Amo05g0434 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 1020 IPR027417 -
Amo05g0434 1067 Gene3D - 800 1063 IPR027417 -
Amo05g0434 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 544 742 IPR014001 -
Amo05g0434 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 8 1061 - -
Amo05g0434 1067 CDD SF2_C_SNF 865 996 - -
Amo05g0434 1067 Gene3D - 499 787 IPR038718 -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 398 412 - -
Amo05g0434 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 786 IPR027417 -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 51 79 - -
Amo05g0434 1067 SMART helicmild6 896 985 IPR001650 -
Amo05g0434 1067 Pfam SNF2-related domain 537 843 IPR000330 GO:0005524|GO:0140658
Amo05g0434 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 869 1067 IPR001650 -
Amo05g0434 1067 SMART ultradead3 516 752 IPR014001 -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 239 272 - -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 398 420 - -
Amo05g0434 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 1061 IPR044567 GO:0080188
Amo05g0434 1067 Pfam Helicase conserved C-terminal domain 868 985 IPR001650 -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 1 199 - -
Amo05g0434 1067 MobiDBLite consensus disorder prediction 119 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0434 Amo-Chr5 4986549 4990294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0434 861 1040 RAD5 or RAD16-like Gene Family AT5G43530 36.612 2.67e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo05g0434 SNF2_N 5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0434 K10875 - vvi:100267731 697.197