Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0427 ATGAAACCAAAGAACCTTCCTGCTTTGAATCTACTCTCTCAACAACTTTCTTACCGTAATTCTCACCTCACCATGGAAGAAATTCCAACCTTTCTAAACTCCAGTGTGATGAAGAAGGTTCCTGTGACGAATAACGAGAATAAAGGTTCACAGTTGACAATCTTCTATGGCGGTGAAGTTATAGTGTTCGATGATATTGAGGCGGAGAAAGTGAAAGAGATGATGTGTCTTGCAAGCAAAGGTTCATCATCAACGATCTCGCAATCAAACCATCACAAAAACAATATCAATAATAATAATAATTACGGTTACAGAGTGGCTCGGCGATGTTCATTTCCTTCGCTACCTAATGATGTGGTTCGGAATACAAGTTCTTGTGTTGCTCCTCCAACTTCTCCTTTTCCTTTTATGATTCCTGCTACCATTCCCAACAATTCGGTTAAGGATCAGCATCCTCAACCACCTTCCAGATCCGTTGTTTCTGATCTACCACTTGCTAGGAAAGCTTCACTACACCGATTCTTGGAGAAGAGAAAGGATAGAATTGCTGCGAGATCACCGTATCAAACAAGCAGCCCCATGTCATGGCTTTCCATGGTAGTTAGATCACCACAGGAGAATTCTGAGACTAGCTCCAGTGTAGTGTAG 648 0.4182 MKPKNLPALNLLSQQLSYRNSHLTMEEIPTFLNSSVMKKVPVTNNENKGSQLTIFYGGEVIVFDDIEAEKVKEMMCLASKGSSSTISQSNHHKNNINNNNNYGYRVARRCSFPSLPNDVVRNTSSCVAPPTSPFPFMIPATIPNNSVKDQHPQPPSRSVVSDLPLARKASLHRFLEKRKDRIAARSPYQTSSPMSWLSMVVRSPQENSETSSSVV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0427 215 Pfam tify domain 48 79 IPR010399 -
Amo05g0427 215 SMART tify_2 45 80 IPR010399 -
Amo05g0427 215 ProSiteProfiles Tify domain profile. 45 80 IPR010399 -
Amo05g0427 215 PANTHER PROTEIN TIFY 10A-LIKE 23 208 - -
Amo05g0427 215 Pfam Jas motif 164 189 IPR018467 -
Amo05g0427 215 MobiDBLite consensus disorder prediction 184 215 - -
Amo05g0427 215 MobiDBLite consensus disorder prediction 185 215 - -
Amo05g0427 215 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 23 208 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0427 Amo-Chr5 4942751 4943894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0427 46 201 Tify Gene Family AT1G19180 33.333 5.97e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo05g0427 tify 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0427 K13464 - gmx:100306332 162.925