Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0424 ATGGAACTTAAGTACCACCAATTTGGCCTTGTTTGTGTCATAATGCTCTTACCTGTAATGTGTACCTCTCAAGACTCATTTACGTGCTCCAGAGCAACCTATTATGGCAGCCCTGAATGCACTGCCAACCCAACGGGAGCTTGTGGCTTTGGCGAATATGGAACGGCGATCAACGATGGCAGCGTGGCAGGCGTGTCTTGGCTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATAGCAGAATACTGCGATGACTATGGAGCATATGTAGTGGTAACAGACTTCGGCGTGGGAGACAGAACCGACTTCATTATGAGTCCACGTGCTTATTCAAGATTGGCCAAGAACGAAGATGCATCTGCAGAGCTTTTCAAATACGGTGTGGTGGACGTAGAATACAAGAGGGTACCATGTAGATACGGTGGCTATAACATCATAGTCAAGGTGAATGAGCGCAGCTACAACCCACACTACTTAGCCATTGTAACTCTCTATGTTGGTGGAACACAAGACATAACTGCCGTTCAGTTCTGGCAGGAAGATTGCAAAGAATGGAGGCCAATGCGAAGGGCGTTTGGGACAGTGTTTGATGTTGAGAACCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGACTGGCAGTGCAGGGGTTTATTGGGTAGAGTCCAAGACCTTTATCACCAGTGATTGGAAGGCTGGAGCATCTTATGATACTCAAATCCAGCTT 747 0.4726 MELKYHQFGLVCVIMLLPVMCTSQDSFTCSRATYYGSPECTANPTGACGFGEYGTAINDGSVAGVSWLWRNGSGCGACYQVRCKIAEYCDDYGAYVVVTDFGVGDRTDFIMSPRAYSRLAKNEDASAELFKYGVVDVEYKRVPCRYGGYNIIVKVNERSYNPHYLAIVTLYVGGTQDITAVQFWQEDCKEWRPMRRAFGTVFDVENPPRGDIKLRFQVTGSAGVYWVESKTFITSDWKAGASYDTQIQL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0424 249 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Amo05g0424 249 PANTHER EXPANSIN-B3 4 249 - -
Amo05g0424 249 Gene3D - 145 246 IPR036749 -
Amo05g0424 249 Gene3D - 17 144 IPR036908 -
Amo05g0424 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Amo05g0424 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Amo05g0424 249 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Amo05g0424 249 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Amo05g0424 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Amo05g0424 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Amo05g0424 249 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Amo05g0424 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Amo05g0424 249 Pfam Lytic transglycolase 62 139 IPR009009 -
Amo05g0424 249 Pfam Expansin C-terminal domain 153 227 IPR007117 -
Amo05g0424 249 SUPERFAMILY Barwin-like endoglucanases 12 148 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0424 Amo-Chr5 4887642 4889119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0424 10 249 Expansin Gene Family AT4G17030 61.826 4.75e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0424 - - gmx:100802855 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0424 05 4887642 4889119 Amo01g1649 01 37544735 37547146 PCT
Amo05g0424 05 4887642 4889119 Amo11g1186 11 39677688 39680589 PCT
Amo01g1649 01 37544735 37547146 Amo05g0424 05 4887642 4889119 PCT
Amo11g1186 11 39677688 39680589 Amo05g0424 05 4887642 4889119 PCT