Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0423 ATGGCTGCATCTGTAAGTAATGGTTTTGAGAAGTCCTTGAGGGAAAATGGGGATTGCAAATTTCATGCCCCATCTGAGTATAAGCGACGTAAAGTTTCTGCCGTTCGTGATTTCCCTGAAGGATGTGGACCGTTTGCTCCAAGGATTGAAGCAGTTTTAAAGTGTGAGGACAATAGCCAGCATCCTGAGTTACATGCCAAAACTCTTGTCCAAACTACTGATTGCAGTTTGAATAAGGAAAATCCAGTCGTCTCATCTGATCAAGTGGATAGGCCTCCTCTGGTAAATGACGAACCTGCAAAAATGTTGCTGGCAGACATGGAAGCTTTGGCAGATACAGAATCTGGAAGAGCTGTGAAGTTGTCTTCTCCAGTTGGTGAGGTGGCTGGTTCCAGTGCTTGGACGGAGAATATGCTAACTAGAAGCTATTTTCCTCGAAGGAAAGTTTCAGCTATTAGAGACTTTCCTGCTTTATGTGGACGCAATGCTCCATCTTTGCTGAATGAAAATAGAGGGGTTGAACAGAAGGCGACTGTAAATGATGACCTCTTGAAAAAAGTAGCTGCCACTGAAATGAAGGAAGCTGAAAATAATGCTCAAGATGATTCTTGCAAGAGAAAGCTTGTGGACATAGTTTTAGCTGATTCTGAAGGGAATGCTACAGAGAATGTGAACAAGCAGGATGTATGTGAACCACCTATTGGGATAAATAAGCAACACAAAAACCCCAGAGAAATGAAAATTGAACTTCCTACAGAGATTGATCATCATCAGGCTGAAATAAATTCTAGGGAAGCAGAAAATGAGGATGCTATACCAGTTGAGAAGACATTAGGAATGGAAATTATAGTGTACCCTGAAGTCCGGGCTCTTGAGGCAAAGCCTTTGCGGGCTGTATCAAACAGGAAAGTAGTGCTAGGGTTGAAGTCTGGGTCAGAATGTTTTCTGAGGTCTAATAATGGTCCCTCCAAATTTAAAGGGATTGATGGTGCAAAGGAAAGCAAAGGAAAGAAAGATGATGTCTTGGTACGGCTTGGCAGGACTAAGACTGCTACCAGGACTAAAGATGGCATACATAATTCTAGGTTGAAGCCTCTGAAGAAGAAAAAGGAAAATGCTGCTTCCCATGACAGAGGTCAGTTAGAAATTTTGGACAAGGATTGTGTTGATCCTAATCAAAATGGTGCGGACTTTCAAACTGTCACAAAACCATGTAGTTTCAATGTCAATGTTCCTCCTTTTGGTCATAGTAAGTTGAGTGATAATGAGAATGACTCAAATGTTACTCGACATAAAGTGCGGGAAACACTACGACTTTTTCAAGCTGTTTCTAGAAAGCTTTTGCAGGAACTAGAAGCAAAGAATGAGCGGGGAAGGGTTGACTTACTAGCAGCGAAGGTCCTTAAGGAGAAGGGGAAATATGTTAATGAAGGTAAGCAGATCTTGGGATCTGTACCTGGGATTGAAGTTGGTGATGAATTTCAGTATAGAATTGAGCTTAATATAGTTGGCCTTCATCGGCAAATTCAGGGCGGTATAGATTATGTGAAGCACAGTGGTAAGATTCTTGCAACAAGTATTGTTGCATCGGGAGGCTATGCTGATGATTTGGATAATTCAGATGTATTGATATATACAGGACAAGGTGGTAATGTGATGAACTCTGACAAACAACCTGAAGATCAAAAGCTTGAACGGGGAAATCTTGCTTTGAAGAATAGTAATGACGAACAGAACCCTGTTAGGGTGATACGTGGTGCTGATTCAGCAGATGGAAAGTCCAAGACGTATGTTTATGATGGACTGTACCTGGTTGAGTCATGTTGGCAGGATATGGGGCCACATGGGAAGCTGGTATATAAGTTTCGGTTGCGAAGAATCTCTGGTCAACCAGAGCTTCCTTTGAAGGAATTGAAGAAATCTAAGAAGTTCAAAATGAGAGAAGGTCTATGTGTTAATGATATTTCTTATGGGAAAGAGCGAATTCCAGTGTGTGCTGTGAATGTCAGAGATGATGAAAAACCCCCACCTTTTAAATACATAACCAGCATGATTTATCCTGATTGTGATCTCATTCCTGCAGAAGGATGTGGTTGCATTAATGGTTGTTCTGAGTTGAGATGTTCTTGTGTAGCCAAGAATGGTGGTGAAATCCCATACAATCACAATGGGGCTATTGTAGAAGCAAAGCCTCTAGTTTTTGAGTGTGGACCTTCTTGCAAGTGCCCTCCAACTTGCTATAACAGAGTCAGTCAACATGGCATAAAATTTCAACTTGAAATTTTCAAAACCAGTACAAGGGGATGGGGAGTGAGATCCCTAAATTCCATCCCTTCAGGTAGTTTTATATGTGAATATATAGGAGAGCTTCTCGAAGATAAGGAAGCAGAACAAAGAACTGGTAATGATGAGTATCTGTTCGATATTGGAAATAACTATACAAACAATACTCTTTGGGACGGACTTTCGAACCTTATGCCTGATGCACAGTCAAGTTCTGGTGGAGTTTTGATGGATGGTTGTGGCTTCACCATTGATGCTGCACAGTATGGTAATGTGGGGAGATTCATCAACCACAGTTGTTCTCCAAATCTGTATGCTCAAAATGTGCTGTATGACCATCATGACAAAAGGATGCCTCACATCATGTTCTTTGCTGCTGAGAACATTCCTCCTCTGCAAGAGCTGGCTTATGACTACAACTACATGATCGACCAGGTCCACGACTCCGATGGCAACATCAAACGGAAAGATTGCTACTGCGGTTCTGTGCAATGTACAGGTAGGATGTACTGA 2796 0.4174 MAASVSNGFEKSLRENGDCKFHAPSEYKRRKVSAVRDFPEGCGPFAPRIEAVLKCEDNSQHPELHAKTLVQTTDCSLNKENPVVSSDQVDRPPLVNDEPAKMLLADMEALADTESGRAVKLSSPVGEVAGSSAWTENMLTRSYFPRRKVSAIRDFPALCGRNAPSLLNENRGVEQKATVNDDLLKKVAATEMKEAENNAQDDSCKRKLVDIVLADSEGNATENVNKQDVCEPPIGINKQHKNPREMKIELPTEIDHHQAEINSREAENEDAIPVEKTLGMEIIVYPEVRALEAKPLRAVSNRKVVLGLKSGSECFLRSNNGPSKFKGIDGAKESKGKKDDVLVRLGRTKTATRTKDGIHNSRLKPLKKKKENAASHDRGQLEILDKDCVDPNQNGADFQTVTKPCSFNVNVPPFGHSKLSDNENDSNVTRHKVRETLRLFQAVSRKLLQELEAKNERGRVDLLAAKVLKEKGKYVNEGKQILGSVPGIEVGDEFQYRIELNIVGLHRQIQGGIDYVKHSGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMNSDKQPEDQKLERGNLALKNSNDEQNPVRVIRGADSADGKSKTYVYDGLYLVESCWQDMGPHGKLVYKFRLRRISGQPELPLKELKKSKKFKMREGLCVNDISYGKERIPVCAVNVRDDEKPPPFKYITSMIYPDCDLIPAEGCGCINGCSELRCSCVAKNGGEIPYNHNGAIVEAKPLVFECGPSCKCPPTCYNRVSQHGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNYTNNTLWDGLSNLMPDAQSSSGGVLMDGCGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHHDKRMPHIMFFAAENIPPLQELAYDYNYMIDQVHDSDGNIKRKDCYCGSVQCTGRMY* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0423 931 CDD SET_AtSUVH-like 676 902 - -
Amo05g0423 931 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 333 931 IPR025794 GO:0016571
Amo05g0423 931 SMART G9a_1 478 630 IPR003105 -
Amo05g0423 931 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 371 930 - -
Amo05g0423 931 SMART PostSET_3 915 931 IPR003616 -
Amo05g0423 931 Pfam SAD/SRA domain 482 630 IPR003105 -
Amo05g0423 931 ProSiteProfiles YDG domain profile. 483 626 IPR003105 -
Amo05g0423 931 SUPERFAMILY SET domain 642 902 IPR046341 -
Amo05g0423 931 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 371 930 - -
Amo05g0423 931 Pfam SET domain 768 901 IPR001214 GO:0005515
Amo05g0423 931 ProSiteProfiles Post-SET domain profile. 915 931 IPR003616 -
Amo05g0423 931 ProSiteProfiles Pre-SET domain profile. 695 754 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo05g0423 931 ProSiteProfiles SET domain profile. 757 901 IPR001214 GO:0005515
Amo05g0423 931 SMART set_7 757 907 IPR001214 GO:0005515
Amo05g0423 931 Gene3D - 464 646 IPR036987 -
Amo05g0423 931 Gene3D SET domain 647 931 IPR046341 -
Amo05g0423 931 Pfam Pre-SET motif 655 749 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo05g0423 931 SUPERFAMILY PUA domain-like 465 639 IPR015947 -
Amo05g0423 931 SMART preset_2 652 741 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0423 Amo-Chr5 4884344 4887230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0423 419 930 Su(var)3-9 homologs AT5G04940 41.199 3.99e-116 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo05g0423 SAD_SRA 5.1e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0423 K11420 - gmx:100803378 1057.36