Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0420 ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTTACAAGTACACCACTTTGGCGCAATGGGCCACCGGAGAAGCCAGTGCTATGCAATGCGTGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACCCCTCTGCATGCTCGGGCAGAAGCTGATGATAGTGAGGATCAAAGGGTTTCCAGGGTAAAGATTATATCATTACATAAGAACAAAGAAATGAAATCTTTAAAACGAAAGCAGAACCATGATAGTGTTGTGGTATCTGGTGGCCTCACCCCTGATTACAAGTACAACCAAGGATTTGGAAAGGCTGTAGATGAAGATACAAGCAATCGTTCAAGTTCAGGATCAGCTATCTCTAACACAGAGAGTTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTTTGGGAAGCCATGGTGCCTTCCAAAAAGAGGACTTGTGTGGGTCGTCCTAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGACTTATGCACTATACTTCATGAGCAGCAATCTTATTTTTCTACATCTTCTGAAGAGGAACTTCTGTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGCGTTCTTATAAAACATCCTAGTTATGTAGCTCGCGAAGAGGTGTCTGAGGCTAGCGCTGTTTCAGTTGATAACAAACAATGCCTAGTGAGTGAAGCATATTCAGATTCTGGTCCCTTTCTTGTGTATAATGATTTGAATGGTATGAACTTCTCATCCTATGGAGTCGACAAGGTTGAGAATTCTGCTGACCAAGAAATGCAGGAGGAGCAACTTAAAAGTGACAAATCTCAGCTTGAGAGAGTACAAATACTTGGAGACCATAATTCCCCATTGTGCTCAATAGATTTAAATGATGTAGTAAACTACAAGGAGTTTGTGAGAAACATGACAAATGAAGACCAACAGCTATTGCTGAAGTTTCTTCCTATGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTGACTTATTTTCAGCAGCTTCTTGGGGAAGGTGTCTTCGATATCTCTTTCTTAGGGGCAAAACCTGAGGACTGCAAAACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACATTATAGTTACCTGAAGAGATGTAAAACCACAGCTGCGAAATCTGTTAGTCAGGGATCAACTGGTAAAGCATCATCTAATTTTGCGAATGCGAAGAGATTGCGTGATGGCCAAAATCAAAACTCTCCAGAACTGAAGACCATGATGAGGAGCCCCAAAGGAATGACCATAAAGATTGGCAGTGAGGGAAATGAAGTTGTAGAAGATGGCTCTTGCTATAGTCCAAAAAGCCTGTTTGCTTTGCCCCCTGATGCTGCCTCGCTCTTGCAAGTTTCTTCGAACTTTGTTGAGGAGAGTTCTGATCATGATGTTTTGGTAGAGGTCCCATCTAATAGTTCATTCCCACAGGCAGAACTTCTGCACCCAACATCAAGCTTTGGTGCTCAAGCAAGCACAAGTAGTAGCTCAGTGTACTCACATTTTGTCCATAATTAA 1632 0.4216 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEADDSEDQRVSRVKIISLHKNKEMKSLKRKQNHDSVVVSGGLTPDYKYNQGFGKAVDEDTSNRSSSGSAISNTESCAQFGGTDASDLTGPAQSVVWEAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSTSSEEELLFESETPMVSVEIGHGSVLIKHPSYVAREEVSEASAVSVDNKQCLVSEAYSDSGPFLVYNDLNGMNFSSYGVDKVENSADQEMQEEQLKSDKSQLERVQILGDHNSPLCSIDLNDVVNYKEFVRNMTNEDQQLLLKFLPMVDTAKLPDSLKVMFNSSQFKENLTYFQQLLGEGVFDISFLGAKPEDCKTLKRLALSNLSKSKWVEHYSYLKRCKTTAAKSVSQGSTGKASSNFANAKRLRDGQNQNSPELKTMMRSPKGMTIKIGSEGNEVVEDGSCYSPKSLFALPPDAASLLQVSSNFVEESSDHDVLVEVPSNSSFPQAELLHPTSSFGAQASTSSSSVYSHFVHN* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0420 543 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Amo05g0420 543 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 410 IPR044867 -
Amo05g0420 543 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Amo05g0420 543 Pfam Asx homology domain 286 370 IPR028020 -
Amo05g0420 543 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Amo05g0420 543 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Amo05g0420 543 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Amo05g0420 543 MobiDBLite consensus disorder prediction 415 446 - -
Amo05g0420 543 Gene3D - 2 85 IPR013088 GO:0006355|GO:0008270
Amo05g0420 543 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Amo05g0420 543 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Amo05g0420 543 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0420 1 520 C2C2-Gata Transcription Factor Family AT4G17570 52.174 4.40e-161 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo05g0420 ASXH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0420 - - gmx:100798504 781.556