Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0402 ATGTGCGAACAAAGCAGTTACGAGGCCGATTTGGCGCTACTGGACTCAATTCGTCGCCACTTGCTGGGAGAGTCCGACCCTTTTATATTCGGAGCACCGAATTGTCATTCGGGTAGCACACCGGTTTTCTGCAGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGCCTGAGCGAAAATTGGGGCGAGTTGCCGCTCAAAGAAGACGATTCAGAAGATATGGTGCTCTACGGCGTTCTCCGCGACGCCGTGAACGTCGGTTGGGTTCCTTCTCTCGAAGCCGGATCACCCGAATCCTTCTCTTCGGGTTACTTACCCGACGTAACGGTTAAATCAGAGCCGGATGTATTTCATTCGGTGCCAAGCTTGCCGGAGCCTGTCATCTCCGCCGTCGTAGCCCCGATTGAAGAGAAGCCTACGCCTGTTCCGGTTCCGGCGAAGGGGAAGCACTACCGCGGAGTGAGGCAGCGACCGTGGGGGAAGTTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGTGCTAGGGTTTGGCTAGGAACATTCGAAACCGCCGAAGACGCTGCTTTAGCTTACGACCGCGCCGCGTACAGAATGCGCGGGTCGCGAGCTCTGTTGAATTTCCCACTCCGGGTAAACTCCGGTGAACCCGACCCCGTGAGGGTGACGTCTAAGCGGTCGTCGCCGGAGCCTTCATCATCGTCGGATAGTGTATCCACGACGAAGAGGAGGAAGAAGACGGTGGGACCGAGGGTACCGGTGGTGACAGGTCAGGTTGAGATGAAGACGGGGCAAGTGGGGAGTCAAGTGGCGCATTGTACACGTGGCGAGCAGTTATTGGTGAGCTGA 843 0.573 MCEQSSYEADLALLDSIRRHLLGESDPFIFGAPNCHSGSTPVFCRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPESFSSGYLPDVTVKSEPDVFHSVPSLPEPVISAVVAPIEEKPTPVPVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSDSVSTTKRRKKTVGPRVPVVTGQVEMKTGQVGSQVAHCTRGEQLLVS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0402 280 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
Amo05g0402 280 Gene3D AP2/ERF domain 148 210 IPR036955 GO:0003700|GO:0006355
Amo05g0402 280 MobiDBLite consensus disorder prediction 210 252 - -
Amo05g0402 280 PANTHER DNA-BINDING DOMAIN 33 266 IPR044808 GO:0003700|GO:0009873
Amo05g0402 280 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677
Amo05g0402 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 33 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0402 Amo-Chr5 4678977 4680628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0402 1 279 AP2-EREBP Transcription Factor Family AT4G17500 53.448 2.61e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g0402 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0402 K09286 - gmx:100819649 342.813