Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0396 ATGACCATGGAAAACCAAGATTTGGGGCTCAGCCTAAGTTTGAGCTTCCCTCAACAACAACTCAATCTCATCCCTTCTCCCTACAAAACCCCTTCTTGGAACAACCAACCCTTCAATTCTTCAGATAATCGAGATTCGGAGACATGCAGGGGCAGTGCTGAAGGTGGATCGTTCCTCCTCCGGGGGATCGACGTGAACAGCTTGCCGTCCGGCGTGGACTGCGAAGACGACGCCGGAGTGTCGTCGCCGAACAGCACAGTTTCGAGCGTGAGCGGCAAGAGGAGCAGCGAGAGAGAACAAAATAATGCCGAAGATCACGACACGGAGAGAGCTTCTTCCAGAGGCATCTCCGACGAAGAAGACGGTGAAACCTCCCGCAAGAAGCTCAGGCTCTCTAAGGACCAATCCGCTGTCCTGGAAGAGAGTTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTAGCACTAGCAAAGCAGCTTGGCCTTCGCGCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTTGACTGTGAGTTTCTAAAGAGATGCTGTGAGAATCTAACGGAGGAGAATAGGAGACTACAGAAGGAGGTTCAAGAACTGAGAGCACTCAAGCTTTCCCCTCAGTTCTACATGCAGATGAGTCCGCCAACTACCCTCACCATGTGCCCTTCGTGTGAGCGCGTCGCTGTTCCTCCCTCAGCCGTCGATCCCGCCACGCGTCATCATCAGATGCCACAACCCCATCACCACACTCGGCCCATTCCAATTGGGCCCTGGGCCGCTGCTCCTCCTGTCTTCCGTCCCAGGTCGTGA 849 0.5347 MTMENQDLGLSLSLSFPQQQLNLIPSPYKTPSWNNQPFNSSDNRDSETCRGSAEGGSFLLRGIDVNSLPSGVDCEDDAGVSSPNSTVSSVSGKRSSEREQNNAEDHDTERASSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMSPPTTLTMCPSCERVAVPPSAVDPATRHHQMPQPHHHTRPIPIGPWAAAPPVFRPRS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0396 282 MobiDBLite consensus disorder prediction 23 46 - -
Amo05g0396 282 Coils Coil 181 218 - -
Amo05g0396 282 MobiDBLite consensus disorder prediction 97 133 - -
Amo05g0396 282 CDD homeodomain 126 183 IPR001356 GO:0003677
Amo05g0396 282 Pfam HD-ZIP protein N terminus 3 96 IPR006712 GO:0005634
Amo05g0396 282 MobiDBLite consensus disorder prediction 23 54 - -
Amo05g0396 282 SMART HOX_1 124 186 IPR001356 GO:0003677
Amo05g0396 282 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Amo05g0396 282 SUPERFAMILY Homeodomain-like 113 183 IPR009057 -
Amo05g0396 282 PANTHER - 2 276 - -
Amo05g0396 282 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Amo05g0396 282 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Amo05g0396 282 MobiDBLite consensus disorder prediction 70 133 - -
Amo05g0396 282 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Amo05g0396 282 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Amo05g0396 282 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Amo05g0396 282 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Amo05g0396 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 276 - -
Amo05g0396 282 Gene3D - 130 180 - -
Amo05g0396 282 MobiDBLite consensus disorder prediction 79 96 - -
Amo05g0396 282 MobiDBLite consensus disorder prediction 247 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0396 Amo-Chr5 4613269 4615221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0396 1 273 Homeobox Transcription Factor Family AT5G47370 60.900 1.14e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g0396 HD-ZIP_N 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0396 K09338 - gmx:547858 365.54