Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo05g0391 | ATGACGCGACGGTGCTCGCATTGCAGCAACAACGGCCACAATTCGAGGACGTGCCCCAACAGAGGGGTTAAGCTCTTCGGGGTCCGATTGACGGACGGGTCGATCCGAAAGAGCGCTAGCATGGGAAATCTCACCCACTATGCTGCGTCGGGTTCTAGTTCCGGGTCCCACCACCATGCATCCAACAATCCGGGTTCTCCCGGCGGTGGTGACACCCCCGATCACGCCGCCGCCGAGGGTTATGCCTCCGAAGACTTTGTTCCTGGGTCGTCTTCTACCTCGCGTGAACGAAAAAGGGGTGTCCCGTGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTACAGAAGCTTGGAAAAGGTGATTGGCGTGGAATTGCACGAAATTATGTCACATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGCAAAAGACGTTCCAGTCTATTTGATATTGTCGCAGATGAATCAGCGGACACACCAATGGTGCAGCAAGATCAGCTACAGGTCGAAACAGAAGGCAATAACCCCTTGCCTCCTGTGCCTCCAGCCCTCGATGAAGAGTGTGAATCCATGGATTCTGCTAACTCAAATGACAGGGAATTGGCCTTGTTGAAGTCAGATAACTCGCGATCACCATTCCCAGTGCTGTATCCTACCTTTTATCCTCCTGTCTTCCAATTACCTATTCCCTGTTGGTCAGGATATGATCCAGAGCCTACTAAGAAGAAGGAAGCTCATGAAGTGTTGAAGCCAACTGCAGTGCATTCTAAAAGCCCAATTAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCCATTGGGGACTCTGCCCCATCCTCCCTGTCCCTAAAACTCCTCGAAGGACCTTCTAGACAATCAGCTTTTCATGCAACTCCAGCGTGCGATAGTTCGAACATGAACGGCAGCGCAATCCACGCATTATAA | 999 | 0.5025 | MTRRCSHCSNNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAASGSSSGSHHHASNNPGSPGGGDTPDHAAAEGYASEDFVPGSSSTSRERKRGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVTSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESADTPMVQQDQLQVETEGNNPLPPVPPALDEECESMDSANSNDRELALLKSDNSRSPFPVLYPTFYPPVFQLPIPCWSGYDPEPTKKKEAHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSAPSSLSLKLLEGPSRQSAFHATPACDSSNMNGSAIHAL* | 333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo05g0391 | 332 | Pfam | Myb-like DNA-binding domain | 102 | 147 | IPR001005 | - | |
| Amo05g0391 | 332 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 1 | 321 | - | - | |
| Amo05g0391 | 332 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
| Amo05g0391 | 332 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 95 | 151 | IPR017930 | - | |
| Amo05g0391 | 332 | PANTHER | BNAC01G21010D PROTEIN | 1 | 321 | - | - | |
| Amo05g0391 | 332 | SMART | sant | 99 | 149 | IPR001005 | - | |
| Amo05g0391 | 332 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Amo05g0391 | 332 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - | |
| Amo05g0391 | 332 | Coils | Coil | 332 | 332 | - | - | |
| Amo05g0391 | 332 | MobiDBLite | consensus disorder prediction | 46 | 77 | - | - | |
| Amo05g0391 | 332 | CDD | SANT | 102 | 147 | IPR001005 | - | |
| Amo05g0391 | 332 | ProSiteProfiles | SANT domain profile. | 98 | 151 | IPR017884 | - | |
| Amo05g0391 | 332 | SUPERFAMILY | Homeodomain-like | 97 | 152 | IPR009057 | - | |
| Amo05g0391 | 332 | ProSiteProfiles | Myb-like domain profile. | 95 | 147 | IPR001005 | - | |
| Amo05g0391 | 332 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Amo05g0391 | 332 | Gene3D | - | 101 | 153 | - | - | |
| Amo05g0391 | 332 | ProSiteProfiles | Zinc finger CCHC-type profile. | 3 | 20 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo05g0391 | 332 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo05g0391 | Amo-Chr5 | 4566200 | 4568730 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Amo05g0391 | Myb_DNA-binding | 5.6e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo05g0391 | - | - | ccaj:109807943 | 534.643 |