Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0389 ATGGACGTGGACCCGCCGCAAAAACCCCTTGTCTCTCCCATCATTGTCAACTCCGCCGCTTCCTCATCTTCCCCCGATCAATCTTCACCTCCACCACCCAAACCACGCGCCAAAAAGAGGGCCGCTGCTAGTGGATACCGCGGAGTACGCATGCGCCAATGGGGCAAATGGGTCTCTGAAATTAGAGAGCCCAAGAAGAGAAACAGAATCTGGCTCGGAACTTACGCCACTGCTGAAATGGCGGCTCGAGCCCACGACGCCGCGGCTCTAGCAATCAAAGGCCGCGCTGCTATCCTTAACTTCCCCGAACTCGGCCCGCACCTTCCACGTCCGCCGACCAATTCCCCTAAGGACATACAAGCCGCCGCTGCCAAGGCAGCCGCATTGGATTACTTTCCAAGCCATGAAGCCGTAGCCAATCCCAGCCGAATCGTGTCCGCGTCGTCCTCATCGTCCTCCTCATCCTCTTCCTCCCACCCTAAGGACAAGGAAGAATCACCGAATTCATCGATGGACAAGGATGATGACATGTTTGTGGACCTCCCTGACCTGATAATTGACTTGGATCACGGTGGTCGAGGAAGTGAATTTGATTACTCGACGCGTTGGCTTGTAAACGAAGCCGACCAACTCGACTCGGCTTTCCAGCTCGCAGAGCCTTTCCAGTGGGAGTCAGTTCCCTACTAA 687 0.556 MDVDPPQKPLVSPIIVNSAASSSSPDQSSPPPPKPRAKKRAAASGYRGVRMRQWGKWVSEIREPKKRNRIWLGTYATAEMAARAHDAAALAIKGRAAILNFPELGPHLPRPPTNSPKDIQAAAAKAAALDYFPSHEAVANPSRIVSASSSSSSSSSSSHPKDKEESPNSSMDKDDDMFVDLPDLIIDLDHGGRGSEFDYSTRWLVNEADQLDSAFQLAEPFQWESVPY* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0389 228 MobiDBLite consensus disorder prediction 158 175 - -
Amo05g0389 228 MobiDBLite consensus disorder prediction 142 157 - -
Amo05g0389 228 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Amo05g0389 228 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Amo05g0389 228 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 MobiDBLite consensus disorder prediction 142 175 - -
Amo05g0389 228 MobiDBLite consensus disorder prediction 1 46 - -
Amo05g0389 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 223 - -
Amo05g0389 228 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Amo05g0389 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 27 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0389 Amo-Chr5 4551465 4552562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0389 46 221 AP2-EREBP Transcription Factor Family AT2G44940 48.544 1.81e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g0389 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0389 - - ahf:112747744 374.785