Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0388 ATGCCCACAATGGAAGGGAATGGATCAACTAAGAAAACATATAATAGAGGGGCGTGGACACCGGAGGAAGATCAAAAGCTAGCTCAATGCATAGAGGTTCATGGACCCAAGAGGTGGAAGACCGTTGCAACCAAATCAGGTCTAAACAGATGTGGAAAGAGTTGCCGCTTGAGATGGTTGAACTACCTTAGACCTAATATCAAGAGAGGCAACATTTCAGATGAAGAAGAGGATTTGATCATAAGGCTTCACAAGTTGCTAGGAAACAGGTGGTCGTTGATAGCAAAGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTACTGGAATTCATGTTTGTGTAAGAAGGTTAATCCCAAAGATCTAAAACCCCACACTAGTTCAACTACGCCACAAGAAACTCGTGCTGATGAGGGAATATCATCAGCACTAGAAAGTGGAGGAAGTGGGCACATGGAAATGAAGTTTGATTTCAATGAATTTTTCGACTTTTCAATTGACGAAGGAGCATATGCATTGGATTGGGTGAACAAGTTTCTGGAGCTTGATGTAATCCCAGAGAGTTCAACCGAGTAA 579 0.4249 MPTMEGNGSTKKTYNRGAWTPEEDQKLAQCIEVHGPKRWKTVATKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNPKDLKPHTSSTTPQETRADEGISSALESGGSGHMEMKFDFNEFFDFSIDEGAYALDWVNKFLELDVIPESSTE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0388 192 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Amo05g0388 192 MobiDBLite consensus disorder prediction 124 140 - -
Amo05g0388 192 Gene3D - 72 142 - -
Amo05g0388 192 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Amo05g0388 192 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Amo05g0388 192 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Amo05g0388 192 MobiDBLite consensus disorder prediction 123 147 - -
Amo05g0388 192 CDD SANT 18 63 IPR001005 -
Amo05g0388 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Amo05g0388 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Amo05g0388 192 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Amo05g0388 192 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 188 - -
Amo05g0388 192 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 188 - -
Amo05g0388 192 CDD SANT 73 111 IPR001005 -
Amo05g0388 192 SMART sant 15 65 IPR001005 -
Amo05g0388 192 SMART sant 68 116 IPR001005 -
Amo05g0388 192 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0388 Amo-Chr5 4536291 4537747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0388 14 169 MYB Transcription Factor Family AT5G40330 50.633 2.47e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g0388 Myb_DNA-binding 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0388 K09422 - gmx:100816449 265.774