Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0386 ATGGATCACTGGAATTTCTCCAAACCCCCATCCCTTCCGCAAGATTCACCCTCCGCTTCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTGCCCTCCCGTCCAACCGATCCCACAGAGAAAAGGGGCAAGCGGAACCACCGCAGGATCCAGCTGTCGCCGCAAGGAAAGTTCAGAAGGCTGACCGCGAGAAACTCCGCCGTGATCGATTAAACGACCACTTCCACGATTTGGCCAACACTTTAGATCCTGATAGGCCAAGGAACGACAAGGCAACCATCCTCACTGATACAATTCAAATGCTTAAAGATTTAACTGCCGAAGTTAATAGGTTGAAAACCGAGCATAAAGCGCTTTCTGATGAGTCCCGCGAGCTAATGCAAGAGAAGAATGAACTCAGGGAAGAGAAGGCGTCCTTGAAATCGGATATAGAAAACCTTAATTCCCAGTATCAGCAGAGGGCCAGAATGATGTTCCCATGGACTGCAATCGACCACTCTGTCGTAATGGCACCACCACCTTATTCATATCCGGTTCCTATACCTATCCCTCCTGCTCCTGTTCCAATTCACCCAACTCTTCAACCCTTTCCTTATTTTGGAAATCAAAACCCTCCTCACATTCCTACTCCTTGTTCAACATATGTTCCATTCTCTGCTCCAATTAATGCCGCGCTTGACTTACCCTCAGCTCAGTATGCTTCTGCATCTCATGTTCCCGCCCAAAAGGATTGTCGGAGCAAGTCACCACCTCATAGGAGAATCACTGATGCAGACAGATGTAGCGAGACTCATGATGTGGCTACGGAGCTTGAACTTAAGATGCCTGGATCATCAACACAGGAGGAATCTTCTTCCGGGGGAACGAAGAAGGTCAAGCATTCAGGGAGGAAGGATAGAGCCGTTGCAGAAGGGAGTGCTTCAAGCCGGTATTCAACGTCTCATGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATCCCAAAGGCTGATAGTTGA 1005 0.4945 MDHWNFSKPPSLPQDSPSASPSPPPPPPPPPPPALPSNRSHREKGQAEPPQDPAVAARKVQKADREKLRRDRLNDHFHDLANTLDPDRPRNDKATILTDTIQMLKDLTAEVNRLKTEHKALSDESRELMQEKNELREEKASLKSDIENLNSQYQQRARMMFPWTAIDHSVVMAPPPYSYPVPIPIPPAPVPIHPTLQPFPYFGNQNPPHIPTPCSTYVPFSAPINAALDLPSAQYASASHVPAQKDCRSKSPPHRRITDADRCSETHDVATELELKMPGSSTQEESSSGGTKKVKHSGRKDRAVAEGSASSRYSTSHGLQDSSNSVGDIPKADS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0386 334 MobiDBLite consensus disorder prediction 240 334 - -
Amo05g0386 334 MobiDBLite consensus disorder prediction 14 37 - -
Amo05g0386 334 Gene3D - 55 140 IPR036638 GO:0046983
Amo05g0386 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Amo05g0386 334 PANTHER TRANSCRIPTION FACTOR BHLH121 37 333 IPR044579 GO:0003700|GO:0055072
Amo05g0386 334 SMART finulus 63 113 IPR011598 GO:0046983
Amo05g0386 334 MobiDBLite consensus disorder prediction 1 92 - -
Amo05g0386 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 125 IPR036638 GO:0046983
Amo05g0386 334 MobiDBLite consensus disorder prediction 289 306 - -
Amo05g0386 334 Pfam Helix-loop-helix DNA-binding domain 58 107 IPR011598 GO:0046983
Amo05g0386 334 Coils Coil 97 152 - -
Amo05g0386 334 MobiDBLite consensus disorder prediction 58 92 - -
Amo05g0386 334 MobiDBLite consensus disorder prediction 247 272 - -
Amo05g0386 334 MobiDBLite consensus disorder prediction 308 334 - -
Amo05g0386 334 CDD bHLH_AtILR3_like 62 136 - -
Amo05g0386 334 SUPERFAMILY Formin homology 2 domain (FH2 domain) 23 33 - -
Amo05g0386 334 PANTHER TRANSCRIPTION FACTOR BHLH11 37 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0386 Amo-Chr5 4514678 4516656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0386 55 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.508 7.53e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0386 HLH 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0386 - - ahf:112747741 592.808