Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0358 ATGGGCAAAGAAAATGGGTCAGCAACGCCGAAGGAAGAAGGCAGTGATGACGGTTACTCAAGTCTTGAGACTGTTGAATTAGAATCTCAGTCACGACCTAGCTTAGAGAAGGACACAGGTTTGCCAAGTTGTCGCGTGTGCCAATGTGCCGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGCATCACTCCGGTGATCAAAGCTTGTAAATGGAATGGGGAAGATGGGGAGGTAAGGTCAGAAGGCCAGGGAATTCAGAAAAATATGTCTTTTAACAAAAATGTTGGAARCAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTSTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGAATCTCTGACTTYAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTCATGTCCATGCGAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAAMGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCCGACACAGTTTCACAGGTTGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCTCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTCCGCTTTTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTRTTCGTTTTCTGGTTTCTTGTGTTTGCMATATGGGCTTCACGGACACATGGTGCCCATACAACGTGA 1098 0.4454 MGKENGSATPKEEGSDDGYSSLETVELESQSRPSLEKDTGLPSCRVCQCAESDKRGDAALEFLGITPVIKACKWNGEDGEVRSEGQGIQKNMSFNKNVGXKSGMVEFVGPNGEVFMCRSDVEIGXSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPHVHANNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGPAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFAIWASRTHGAHTT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0358 365 MobiDBLite consensus disorder prediction 22 37 - -
Amo05g0358 365 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Amo05g0358 365 SUPERFAMILY RING/U-box 129 168 - -
Amo05g0358 365 MobiDBLite consensus disorder prediction 1 37 - -
Amo05g0358 365 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 364 - -
Amo05g0358 365 SMART ringv_2 117 166 IPR011016 GO:0008270
Amo05g0358 365 PANTHER ZINC FINGER, RING-CH-TYPE 16 364 - -
Amo05g0358 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0358 Amo-Chr5 4278206 4281748 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0358 1 355 C3H Transcription Factor Family AT5G08750 63.636 2.80e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0358 - - gmx:100805323 540.421