Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0356 ATGTCTTTTAACAAAAATGTTGGAAACAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGGCAATAATATCAGAATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAAGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTAGGGATCCTGGTCCTCATGTTCATGCAAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAAAGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCCGACACAGTTTCACAGGTTGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCGCAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGTGTGGCTGATAGCTCCTCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTTTCTGCTTTTTTGTGCTTATTAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTTGCAATATGGGCTTCACGGACCTTAG 810 0.4284 MSFNKNVGNKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIGNNIRISDFNKVVGSLKEYEALRERTVSRDPGPHVHANNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGPAQSPATKWAVEGAGILLATGLLTITLVWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFSAFLCLLESSTDLHVIGQSCSFSGFLCLQYGLHGP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0356 269 SMART ringv_2 26 75 IPR011016 GO:0008270
Amo05g0356 269 PANTHER ZINC FINGER, RING-CH-TYPE 4 237 - -
Amo05g0356 269 SUPERFAMILY RING/U-box 37 76 - -
Amo05g0356 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 77 IPR013083 -
Amo05g0356 269 Pfam RING-variant domain 40 74 IPR011016 GO:0008270
Amo05g0356 269 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 237 - -
Amo05g0356 269 ProSiteProfiles Zinc finger RING-CH-type profile. 15 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0356 Amo-Chr5 4253781 4258120 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0356 6 234 C3H Transcription Factor Family AT5G08750 66.807 2.74e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0356 - - adu:107487456 487.648