Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0349 ATGAATAATCTCAACAACTTGGTTTCAATTGTGTTCAATTTAATTGGTCTAACAAAGGGACCAAGCAATGTCTCTTTATGTTATTTGCTATCATCTGACTCTGCAGCAGCATCTTCATCAAATGAACTCATCATGGAGAATAATGGTGAGGCTGTTTGGTGCTGTGTATGCTTGTCGAGGTTAAAGGACGAAGACGAAATTCGAGTCCTTCCTTGCCTGCACAAGTTCCACAAGGTTTGTGTGAATAGATGGCTCAAAGGTCGCCACAAAACCTGCCCCCTCTGCCGGTTTTCGATGGGAGGTGGCGGCGAGGAGAAGTCGCACCACCGGCCCGAAATGTTCACTGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAG 393 0.4453 MNNLNNLVSIVFNLIGLTKGPSNVSLCYLLSSDSAAASSSNELIMENNGEAVWCCVCLSRLKDEDEIRVLPCLHKFHKVCVNRWLKGRHKTCPLCRFSMGGGGEEKSHHRPEMFTEEMLIWFSSFHIAGM* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0349 130 Pfam Ring finger domain 54 96 IPR001841 -
Amo05g0349 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 101 IPR013083 -
Amo05g0349 130 PANTHER GB|AAF27103.1 37 115 - -
Amo05g0349 130 SMART ring_2 54 95 IPR001841 -
Amo05g0349 130 PANTHER TARGET OF ERK KINASE MPK-1 37 115 - -
Amo05g0349 130 SUPERFAMILY RING/U-box 48 99 - -
Amo05g0349 130 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0349 Amo-Chr5 4200123 4200629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0349 48 100 C3H Transcription Factor Family AT1G80400 49.057 1.28e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0349 - - gmx:100809233 162.925