Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo05g0342 | ATGGAGTTTGTGCCAAATCCGTCTCCTCTGAGGTCCTCTCTGTTCGGTTCCTTCGGGGATCTCGTCGAGAGGATCAAGCAAATTGGAACCCTCGCTGTTTCTGCCGTCATTGGCAACATCTTCTCTGCGATCTTGACCTTCTGCTTCGCATTAGTTGGGACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGACAAGAGACTGAGAGTGGCTTCATTAGAGGTGCTGCTGTTGGTGCCATCTCAGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCCTCTCTTGTTCTTTGGCAATCTGATGAGTCTGGAATTGGGTGTCTCTTGTACCTGATTGATGTTATTGCTAGCTTAGTGAGTGGGAGACTTGTTCGTGAGAGGATAGGTCCAGCAATGTTGAGTGCAGTTCAGAGTCAGATGGGTGCTGTTGAAACCGGTTTTGATGAAGTTCAAAACATCTTTGACACTGGTGGTTCAAAAGGCTTATCTGGAGATTTGGTCGAAAAAATCCCAATAATCAAAATTACTAGTGACAACAATGTTGATGCTTCTGGTGAAAGAGTGTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGTCAGTTAGAAGCTTGCCCCATTGTCATCACATGTTTCACCTACCCTGCATAGACAAGTGGCTGTTTAGACATGGTTCTTGTCCATTATGCAGAAGGGATCTGTAA | 708 | 0.4562 | MEFVPNPSPLRSSLFGSFGDLVERIKQIGTLAVSAVIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLVSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGGSKGLSGDLVEKIPIIKITSDNNVDASGERVSCSVCLQDFQLGESVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo05g0342 | 235 | CDD | RING-H2_PA-TM-RING | 190 | 232 | - | - | |
| Amo05g0342 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - | |
| Amo05g0342 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 12 | 235 | - | - | |
| Amo05g0342 | 235 | SUPERFAMILY | RING/U-box | 189 | 235 | - | - | |
| Amo05g0342 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Amo05g0342 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 235 | IPR013083 | - | |
| Amo05g0342 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Amo05g0342 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 12 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo05g0342 | Amo-Chr5 | 4114541 | 4117898 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo05g0342 | 21 | 235 | C3H Transcription Factor Family | AT5G66070 | 77.674 | 4.08e-118 | 334 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo05g0342 | - | - | lja:Lj2g3v1670720.1 | 427.943 |