Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0331 ATGGCGGATTCTCCTGTGAGAAGGAACTCAAGGTCCCCTTCCCCGTGGAGAGCTCAATCAAGATCAAGATCCAGGTCAAGGTCCAGGTCTAGGCCTAGGTCTAGGTCTAGATCACGATCTATCCCAAGACAAAGGCCAAGGTCCCGTTCAAGAAGCCGCGGCAGACCAAGATCAAGAAGTCATGAGAGGGTGGGAGAGACTCAAAATCCAGGGAATACACTTTATGTGACAGGTCTATCGTCAAGGGTGACTGAGAGAGACTTAGAGGAGCACTTCTCTAAAGAAGGAAAAGTTGCATCATGTTTTCTTGTGGTGGAGCCTCGAACACGGATTTCTCGTGGTTTTGCTTTTATCACAATGGATACTGTTGAGGATGCTAACCGCTGTATCAAATACCTAAATCAATCAGTTTTAGAGGGTCGCTATATCACAGTTGAGAGGTCGCGAAGAAAGCGGCCAAGAACTCCCACACCTGGACACTATCTTGGGTTGAAAAGTACAAGAGACTATGGGCACCGTGGTGACCGTGGTGCTGATCGTGGAAGGTATCGAGGTGGACCTGGACGTGATGATTATCAATATCGACGGTCCCCTAGGCGATCACCATATCGAGGTGGCAGGGACTATTCTCCAAGGCGCTCTCCCTATGGTGGGGGTGGAAGATCTAGGAGGGAAAGGTCTAGGTCACCCCCTTACTCTCCATACGGCAGCCCAGATAGGAGATATGCTCGGGGATCTAGGTGA 744 0.5013 MADSPVRRNSRSPSPWRAQSRSRSRSRSRSRPRSRSRSRSIPRQRPRSRSRSRGRPRSRSHERVGETQNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGHRGDRGADRGRYRGGPGRDDYQYRRSPRRSPYRGGRDYSPRRSPYGGGGRSRRERSRSPPYSPYGSPDRRYARGSR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0331 247 SUPERFAMILY RNA-binding domain, RBD 64 179 IPR035979 GO:0003676
Amo05g0331 247 SMART rrm1_1 73 146 IPR000504 GO:0003723
Amo05g0331 247 MobiDBLite consensus disorder prediction 1 75 - -
Amo05g0331 247 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 243 - -
Amo05g0331 247 MobiDBLite consensus disorder prediction 147 247 - -
Amo05g0331 247 Gene3D - 7 157 IPR012677 -
Amo05g0331 247 CDD RRM_RBMX_like 71 150 - -
Amo05g0331 247 PANTHER RNA RECOGNITION MOTIF 2 243 - -
Amo05g0331 247 MobiDBLite consensus disorder prediction 1 21 - -
Amo05g0331 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Amo05g0331 247 MobiDBLite consensus disorder prediction 166 207 - -
Amo05g0331 247 MobiDBLite consensus disorder prediction 22 58 - -
Amo05g0331 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0331 Amo-Chr5 4019739 4022750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0331 71 157 Eukaryotic Initiation Factors Gene Family AT1G49760 31.034 2.66e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0331 K12897 - zju:107408932 236.884