Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0307 TGGAATTCGTCTTCGAGTTGTACTGCTTTGTCTTACTGTTGTCAAGCAGATGAATGCCTAGCAGACTTGCAGGCTGCTAAGAGGTACAATCGCCGTCACAAGGTTTGCGAGCGACATGCTAAAGCTCCGGTTGTCTTAGTTTCTGGCACTCGGCAAAGATTCTGCCAACAGTGTAGCAAATTTCATGAGCTAGCCCTGTTTGATGACAACAAAAGGAGCTGCAGAGAAAGATTGGCCAGTCACAATGAGCGTAGAAGAAAAGCTCAAGCTCATCATGCAGACCTTCAATCCCAACCAGAGAGCGATATTAATTAA 315 0.4571 WNSSSSCTALSYCCQADECLADLQAAKRYNRRHKVCERHAKAPVVLVSGTRQRFCQQCSKFHELALFDDNKRSCRERLASHNERRRKAQAHHADLQSQPESDIN* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0307 104 Gene3D - 10 75 IPR036893 GO:0003677|GO:0005634
Amo05g0307 104 MobiDBLite consensus disorder prediction 78 104 - -
Amo05g0307 104 SUPERFAMILY SBT domain 12 92 IPR036893 GO:0003677|GO:0005634
Amo05g0307 104 MobiDBLite consensus disorder prediction 78 93 - -
Amo05g0307 104 Pfam SBP domain 14 87 IPR004333 GO:0003677
Amo05g0307 104 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 92 IPR044817 GO:0003677
Amo05g0307 104 Coils Coil 78 98 - -
Amo05g0307 104 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 92 - -
Amo05g0307 104 ProSiteProfiles Zinc finger SBP-type profile. 11 88 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0307 Amo-Chr5 3793895 3794308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0307 14 104 SBP-box Gene Family AT1G53160 58.242 5.39e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo05g0307 SBP 3.1e-31 No_clan