Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0298 ATGGACAAAAATGCTTCCTCCTCCTCCTCCTCCTCCTCTCCTTCAACCTCCACCACCGAACAACCACCACCACCGTCGCCGCAAGATGTCCCTGTTGAAGAGCCACCAGTAATTCTGAAAACACCAGAAGAAGTGCTGGCTGAACTCTCCGAAAGCGGGGAAAGCCCGCCGCCTCCTCCGCCTTCGGCTGCAGAAGAAGAAGGAGGGATTGGCGGGTCGGCTATGGCAATAGCGGTTGGTGTTGGTGGAGAGGGAGTGGTGTTGGGTGAAGCGGGTTCCGGTGGAAGTGGTGCAGGTGGTGCAAGTAGAAAGAGAAAGGCATCGGAAGTGAAGGACCCTCCAACTGGAACACCAACATGTCCAGTTTGTAACAAAACTTTTGCAAGTTGGAAAGGTGCTTTTGGACACATGAGGAAGCACCCTGATCGCCAGTACCGTGGCTTCTTCAAGCCACCAACTTTCACGTCCTCTGCCGCCGCCGCCGCTGCTACTGGTGGTGCCACCACCCAGGGCTCTGCGGAGGGAGGAAGTAGTGCCGCTTCTGGCGAAGGAGGAAGTGCTGGCGCCGCCGGGCAAGTTGGAGAAGGCGGAGCATTTGATCTCAACCAGCCAATTGGAGGAGCCGGCGGTGGTGGTGAAGGAGGGAACGGTGATGAAGGAAAAGATTTAGGGTTTGATCTCAATAAGCCTGCCGATGAAGAAGACAAGGCATGA 714 0.5616 MDKNASSSSSSSSPSTSTTEQPPPPSPQDVPVEEPPVILKTPEEVLAELSESGESPPPPPPSAAEEEGGIGGSAMAIAVGVGGEGVVLGEAGSGGSGAGGASRKRKASEVKDPPTGTPTCPVCNKTFASWKGAFGHMRKHPDRQYRGFFKPPTFTSSAAAAAATGGATTQGSAEGGSSAASGEGGSAGAAGQVGEGGAFDLNQPIGGAGGGGEGGNGDEGKDLGFDLNKPADEEDKA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0298 237 MobiDBLite consensus disorder prediction 1 72 - -
Amo05g0298 237 MobiDBLite consensus disorder prediction 86 123 - -
Amo05g0298 237 MobiDBLite consensus disorder prediction 219 237 - -
Amo05g0298 237 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 235 - -
Amo05g0298 237 MobiDBLite consensus disorder prediction 1 17 - -
Amo05g0298 237 MobiDBLite consensus disorder prediction 157 179 - -
Amo05g0298 237 MobiDBLite consensus disorder prediction 157 237 - -
Amo05g0298 237 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Amo05g0298 237 MobiDBLite consensus disorder prediction 18 32 - -
Amo05g0298 237 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 10 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0298 Amo-Chr5 3697022 3697922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0298 114 162 C2H2 Transcription Factor Family AT4G35280 46.939 4.13e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g0298 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0298 - - adu:107487295 130.568