Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0294 ATGGAGAAGAACCAATCTACCTCTGCTTCCACCACCTCACTTCCATCCTTGTCCCTTTCAACTCCCGTTACTGAACCACCATCTTCACCACTTGTTGATCAACCCAACTTAAGCGGTGAAGAAGAAAAACTAATCATTCTCAAGACTCCTGAGAAAATTCTCACGGATCTCACAACAAATAATGATACTAATGGAGGAGGAAGCCTTCCACCATCACCACCACCACCATCACCACCGCAGATGATGGTAAGTGGGGCTATCGCAACTGCGGTGGGTGGTGGTGCAGTGGTTTTGGGTGGTAGTAACATTATTGGTCCTGTTAAAAGGCGAAAGGCTTCCGAAATTATTGATCCTCCAAGCGGTACACCAACATGTCCAATTTGTAGCAAAACATTTTCGAGTTGGAAGGGAGCCTTTGGACATATGAGAAAACACCCTGATCGCCAGTACCGTGGCTTCTTCAAGCCACCTACTTTCCCCTCTGCCTCTTCAAAGGCCGCCACCAATGCTAGTGGCAACCGTCACGAGGCTGCTGGCGAAGAAGGAAGCAGTGCTGATGCCTCCGGCGAGGTTGGAGAAGGTGGAGCTTCACCGGCGGTTCGCAACCTGCTGTTTGACCTCAACCTCCCAGTGGAGGGAGAGTTGTGGCGGATATTGGCAGAGAAAAGGCAGAAACACTACCAACTGCTGCTGACCGCCATGAAAGAGGTGGTGGCACGGCAGCTCAGAGAGAAGGAGGCGGAGGTTGAGAAGGCCATATGGCAGAACGCCAAACTAGAGGCACATGCCGCACAGCTCGCGGCAGAGGCGCAAGTGTGA 819 0.5177 MEKNQSTSASTTSLPSLSLSTPVTEPPSSPLVDQPNLSGEEEKLIILKTPEKILTDLTTNNDTNGGGSLPPSPPPPSPPQMMVSGAIATAVGGGAVVLGGSNIIGPVKRRKASEIIDPPSGTPTCPICSKTFSSWKGAFGHMRKHPDRQYRGFFKPPTFPSASSKAATNASGNRHEAAGEEGSSADASGEVGEGGASPAVRNLLFDLNLPVEGELWRILAEKRQKHYQLLLTAMKEVVARQLREKEAEVEKAIWQNAKLEAHAAQLAAEAQV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0294 272 Coils Coil 242 262 - -
Amo05g0294 272 MobiDBLite consensus disorder prediction 1 35 - -
Amo05g0294 272 MobiDBLite consensus disorder prediction 156 194 - -
Amo05g0294 272 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 106 178 - -
Amo05g0294 272 MobiDBLite consensus disorder prediction 53 67 - -
Amo05g0294 272 MobiDBLite consensus disorder prediction 1 38 - -
Amo05g0294 272 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 106 178 - -
Amo05g0294 272 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Amo05g0294 272 MobiDBLite consensus disorder prediction 50 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0294 Amo-Chr5 3676538 3680273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0294 119 169 C2H2 Transcription Factor Family AT4G35280 47.170 1.41e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g0294 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0294 - - adu:107487295 328.176