Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0287 ATGGGTAATTGTTTTGGTTCACCACCTACGAATGAATCACACTCTACCATCAATAAACCTCGTCATTATTCAGGTTCTTGGAGTGGTGGTGATGAGAGCAAGAAGGTGGCATCATCAACAATTGATGATGGAGGAACAAGCAGCCAAGGAATTAGTAGTCATCAGTTTTCGGCATCGGAGATTTCGAGCTTCGGTGGAAGCTTCGGTGGATCGATCATAACTCACAGTGGCCAGATTCTTGAGACTCCGAATCTGAAAGTGTTCAGTTTCATGGAATTGAGAGTGGCAACGAAGAACTTCAAGCCGGATACATTGCTGGGCGAAGGTGGATTCGGAAAGGTTTACAAAGGTTGGTTGGATCAGAGAACGCTTTCTCCGGCCAAAGCGGGTTCCGGCATGGTCGTCGCCGTCAAGAGACTCAACACCGAGAGCGTTCAGGGATTTCAAGAGTGGAAGTCAGAAGTCAGCTTCTTAGGAAGGATTTCTCACCCAAATCTTGTTAAGCTTTTGGGTTATTGTAGAGAAGCTGATGAACTTCTCCTTGTTTACGAGTTTATGCCTAAGGGAAGCTTGGAGAGCCATCTCTTCAGAAGAAACTCTAATACAACAGAACCAATTTCTTGGAACACTCGTCTCAAAATAGCCATTGATGCTGCTAGAGGCTTGGCCTTCTTGCATACTTCAGAAAAGCAAGTTATATATAGAGATTTTAAGGCCTCCAATATATTATTAGATGGGGATTACAATGCAAAGATTTCGGATTTTGGATTAGCTAAATTGGGGCCTGCTGGAGGAGAATCACATGTGAGTACCAGAATCATGGGCACCTATGGTTATGCTGCTCCAGAATACATAGCAACTGGTCATTTGTATGTGAAAAGTGATGTGTACGGATTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGCTGAGAGCACTTGACACAAAGAGACCAACAAATCAGCAGAACCTTGTTGAATGGAAGAGGCATTCACTCTCTGATAAGAAGAACATTAATAAGAACATCATGGATCCAAGAATTGAGGATCAATACTCAGTCAAAGCTGCAACACAAGCAGCTCAACTTACCCTTAAATGCCTTGAACCTGTCCCCAAGAACCGCCCTTCTATGAATGAAGTCTTGAAGTCTTTGGAATCCATTGCTGCTATCAAACATAGAACCTCCAAGAAGCCTTCCAAGAAATTAAACACCATGCATAGTGCTAATTAA 1230 0.4325 MGNCFGSPPTNESHSTINKPRHYSGSWSGGDESKKVASSTIDDGGTSSQGISSHQFSASEISSFGGSFGGSIITHSGQILETPNLKVFSFMELRVATKNFKPDTLLGEGGFGKVYKGWLDQRTLSPAKAGSGMVVAVKRLNTESVQGFQEWKSEVSFLGRISHPNLVKLLGYCREADELLLVYEFMPKGSLESHLFRRNSNTTEPISWNTRLKIAIDAARGLAFLHTSEKQVIYRDFKASNILLDGDYNAKISDFGLAKLGPAGGESHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDTKRPTNQQNLVEWKRHSLSDKKNINKNIMDPRIEDQYSVKAATQAAQLTLKCLEPVPKNRPSMNEVLKSLESIAAIKHRTSKKPSKKLNTMHSAN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0287 409 Gene3D Transferase(Phosphotransferase) domain 1 186 408 - -
Amo05g0287 409 MobiDBLite consensus disorder prediction 1 52 - -
Amo05g0287 409 CDD STKc_IRAK 106 387 - -
Amo05g0287 409 SUPERFAMILY Protein kinase-like (PK-like) 84 390 IPR011009 -
Amo05g0287 409 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 57 397 - -
Amo05g0287 409 ProSitePatterns Protein kinases ATP-binding region signature. 106 138 IPR017441 GO:0005524
Amo05g0287 409 ProSiteProfiles Protein kinase domain profile. 100 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0287 409 Gene3D Phosphorylase Kinase; domain 1 71 185 - -
Amo05g0287 409 PANTHER OS01G0588500 PROTEIN-RELATED 57 397 - -
Amo05g0287 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Amo05g0287 409 MobiDBLite consensus disorder prediction 31 52 - -
Amo05g0287 409 MobiDBLite consensus disorder prediction 1 23 - -
Amo05g0287 409 Pfam Protein tyrosine and serine/threonine kinase 104 384 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0287 Amo-Chr5 3624246 3630577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0287 86 384 Glycoside Hydrolase AT3G07070 49.667 4.66e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo05g0287 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0287 - - pvy:116127793 517.309