Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0286 ATGGATTCCTCACTCAGCATCCTCTTAGTCTTCAACAACACCATCCAACCAGAGTTGTTCAGGAGCGTGCATGTGTATTGCAGAGAATTATTGGATGGGGACGAAAGGGAGGAAGAAGAAGTGGTAGTTGAGAGGGAGTTTGTGTTATCTGAGAGTGGCTTCTACGTGGAAATGAAGTGCACTCCAATTCTCACATCACTCAAGCTTTGTGTTGATGATGTTTGTGAAGGTTACAAGAATGGTGTGTGGCTTTGTGTCTTTGCGTTTCATGCTGATCACACGCCTCAATTCACACACATTCCTTCAATTTTGTTGTTCGCCAGAAACTCAAAACTCAAGGCAATTCCCAACTTGCTTAATGATCTCCAGATTATATACAAGCTGGAATTGAAAGCAGAAGTCAAAGATGATCTGCTAGATTCTTCAAAGGAAGAATCACAGGGAAATAGCGATGGTCACCAATCACCACAGAAAGCCTTGCCAGTATTTAATCAGGATCTAAATTGCCTTCCTTTGGATGAAGACACAACTGAGTTGATCGACAAGAAGACAAATGTTGAAAGCTTACCAGGTTTTGGAGCAAAGAAAAGGAGGGCGCAAAGCGACCACATAGCGAAAATTGCTTTACCAGATTTGGTCAAGTACTTTGATGTGCCAATTGTAGAAGCGTCAAGAAATCTGAATATTGGGCTTACAGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCACATAGGAAGATAAAATCACTTGACAATCTCATTCATGATCTTGAGGAAGAGGCGAAACACCAAGAACCAAAGGACAAGGTGGCAGCGATGGCGATGGTGAGGAGGCAAAGGATGTTGGAATGCGAAAAGGAAAACATGGAGAAGAAGCCCTTCATGGACATACAAACTGAGACCAAGAGATTCAGGCAAGATGTGTTCAAGAGAAGGCACAGAGCTAGAGCTGTTGAAAAACATAGTTCTGCAGTTTAA 990 0.4273 MDSSLSILLVFNNTIQPELFRSVHVYCRELLDGDEREEEEVVVEREFVLSESGFYVEMKCTPILTSLKLCVDDVCEGYKNGVWLCVFAFHADHTPQFTHIPSILLFARNSKLKAIPNLLNDLQIIYKLELKAEVKDDLLDSSKEESQGNSDGHQSPQKALPVFNQDLNCLPLDEDTTELIDKKTNVESLPGFGAKKRRAQSDHIAKIALPDLVKYFDVPIVEASRNLNIGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLEEEAKHQEPKDKVAAMAMVRRQRMLECEKENMEKKPFMDIQTETKRFRQDVFKRRHRARAVEKHSSAV* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0286 329 PANTHER PROTEIN RKD5 8 325 - -
Amo05g0286 329 Pfam RWP-RK domain 207 254 IPR003035 -
Amo05g0286 329 ProSiteProfiles RWP-RK domain profile. 189 274 IPR003035 -
Amo05g0286 329 PANTHER PROTEIN RKD4 8 325 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0286 Amo-Chr5 3615820 3619772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0286 15 329 AtRKD Transcription Factor Family AT4G35590 43.333 2.58e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo05g0286 RWP-RK 5.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0286 - - gmx:113001653 424.476