Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0278 ATGGGAGGTTTATTACACTTGTTTGAGTTCAATCAGGGGAGGATGGCCAAGAAAGTTCATGCTCATAAAAGGCATCAGGGTGGCCTGGAAGCTCCCCGGAATAGCCTGGATCTGCAATTAGAAACGTCTCAGTACCACTGTCCGGAAGGAGAATTACCAATAGCATATGACTATCAAGTAGAAGAAGACTGGTCAGAGAACATTCACTGTGCAAATATGGGTTCGATGAAAAAGCTTATCAATGAGGAGCTATCCAAACGCTCAACCACCAGGCAAAATGCACCAAGCCTCGTGGCAAGGTTGATGGGGATTGATACGATGCCACCAGACACAAAATCTGTTGTTCCATTAGAAAGAACTAGTGAAATTATGGGGACAAAGTTTTCAAAGAGGGAAATGAATGGAAGGGATTCGGTTAGTCGGGGCTATTATAATTTCAATTCTTCTAGTGAAATGGAATTAGATTCATTTTATGGAGGCATAGATGATGATGATGGGTGGAGCCAAAGTTTCGGAAAACCAAGGCCACGGGAACATCCTCAAGAAGAGGAACTCCAGAAATTTAAGAAAGAGTTTGAAGCGTATCAAGCAACACGGTTTCTGGAGTGCTCAAAGGTTGCCGAAATCGATAGTATTCCTAGACGATTACTTCCTCAAGAGAACCTGAACAAGGAAAATTTGACACATGATACAAGTTCACACAGAACAACCATGGAGAAACTTGCAGAACTTGATAGCCACTTGCTCAAATCAGAGCTACCCGACATTGGTGGTCCCGAATATGGTGATGATGTGATGGAGTTAATCCCAGCTATGCAAAAGAAATCCTTTCCTTCAAGGAGCAGAACACTAAGTAGAGATTTTGAGGAGTCCTTGATAATGAAATCTTATCACAAATTTGATAGATCTTCTTCTCCGACTCGGATAGTTGTCTTGAAGCCTGGCCTTGATAGCATTTGCAACCATGAAGACAGTTGGACTGGTTCATCTGGCACTTTACAAGGCAGAAACAGTATAGCAGATTTTCTTGAGGAGGTCAAAGAGCGATTGAAAAGTGAACTACAAGGGAGAACTGTCAAGAAGGGTTCTGTGGTTCGAGGGAGTGGAATTGAGACACGTTACAATGAAAAGCCAGCTGATCCTAAACTAATAGCCCAGCACATAGCAAAACAGGTCAGAGAAAGTGCAACTAGAGACGTCGAAGCAAATTTATTCCGGTCAGAATCAACAAGGTCATATAAGAATGATATGCTGTTCAACGGACCAAGCTCCCCAGAATTTATCAACAGAGACACAAGGAGGTTCTCGTCGGAGAGGCTAAGAAATATTGGGAAAAGCGAAATGCGCATTGACCTTCCTGAGGTGACTTCTAGGAACTTGGCGCCACATGCTTTAGTCAATCACAGAGTTAGGCAAAAGCAAACAGAAGATAAGTGTTCAAATGCCACAAGCCATTGGAAAGTTTCAAAAGGGGAAAATGAAATACAAACAGGATCTTTCAGACATGATCCAGATGACAATGTGTTGTTCCAAAGGGACTTGTCCCCAAGAAACCTTGTAAGGTCCTTGTCTGCTCCTGTATCAGGATCAGGAACATCGTTTGGGAAGCTACTTCTAGAGGATCGCCACGTTTTAACTGGTGCACAAATTCGAAGGAAGCTTGAAGCTGTTGAAACTATTTCTGTTGATGTTAAAAAACAGAAAAAGGATAGATTCAATATCAAAGAGAAAGTCTCCCACTTTAGATATAGCCTTGGTCTAAGAGGGAGGCTTTTCGGAAAAAGGATTCAATCAATGGTAGAATCACATGGCAATGAATATGGTTCCATGGTGAGAGATGTCACCAGTGGACCGACAGTTCTATTGACCTACGGCGAGAGGCATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCAGTGTGCAGCAGTGTTCATGAAGAATTTTGGAAGCGAGCTGAATATTTAAGTCCACTATCAACTCCAGACGTTTCTTCGAGGGACGACAACATTGTTCCCCAGGTTTTCAGAGATATCAGCTCTGGTTTGAGTGAGCTAAGGAGACAGCTCAATCAACTCGAGTCCAATGGTTCCGATGACATGACAACAAAACAGGAGCCTCTTGAATCCGAGATAGTTCAACTAGAGGATCCTGCAGAATCTTTCATAAGAGATCTACTAGTTGCCTCTGGTCTGTACTTTGGATCATGGGATAAATCTTTACTAAGAGGAGACTCATTGGCAAAGCCTATCGGTAACTCGGTATTCAAAGAAGTGGAAGCATCCGGCGAGAGATCAATCAACGAGAATTACGAAGATTCTATAAAGGATCGGAATGAGAATATGATAAACAAGAGGGTCTTGCTTGATTTGTTGAACGAGGCACTTTCGGTTGTTCTTGGACCATCTTTGACATTATCAAGATTCAGAAGGAAAGTAAGCAACACTTCCATGATGATGGCACCACCTTGTGGAAAAGAATTGTTGAAATCAGTGTGGGAAATCATCAGTGCTTCTTTGTATCCGCAATGTGATGAAATATATCCTTATTCTCTTGATGATTTGGTTGCTCAACATTTGGGGTCAGTCCCTTGGTCTGGATTAGTATCTGAAGAGATCAATGTATTGGAAAGAGATGTAGAATGTATGATAACCAATGATCTGGTTGAAGAACTCACAAAAGACATGCTCCTTTTTCGGCCTCAATCGAACCAGCAGCAGACGAGTCTTATTACCAGGAATTCGACTAACTCGACCTGA 2760 0.4239 MGGLLHLFEFNQGRMAKKVHAHKRHQGGLEAPRNSLDLQLETSQYHCPEGELPIAYDYQVEEDWSENIHCANMGSMKKLINEELSKRSTTRQNAPSLVARLMGIDTMPPDTKSVVPLERTSEIMGTKFSKREMNGRDSVSRGYYNFNSSSEMELDSFYGGIDDDDGWSQSFGKPRPREHPQEEELQKFKKEFEAYQATRFLECSKVAEIDSIPRRLLPQENLNKENLTHDTSSHRTTMEKLAELDSHLLKSELPDIGGPEYGDDVMELIPAMQKKSFPSRSRTLSRDFEESLIMKSYHKFDRSSSPTRIVVLKPGLDSICNHEDSWTGSSGTLQGRNSIADFLEEVKERLKSELQGRTVKKGSVVRGSGIETRYNEKPADPKLIAQHIAKQVRESATRDVEANLFRSESTRSYKNDMLFNGPSSPEFINRDTRRFSSERLRNIGKSEMRIDLPEVTSRNLAPHALVNHRVRQKQTEDKCSNATSHWKVSKGENEIQTGSFRHDPDDNVLFQRDLSPRNLVRSLSAPVSGSGTSFGKLLLEDRHVLTGAQIRRKLEAVETISVDVKKQKKDRFNIKEKVSHFRYSLGLRGRLFGKRIQSMVESHGNEYGSMVRDVTSGPTVLLTYGERHENSTEVPPSPASVCSSVHEEFWKRAEYLSPLSTPDVSSRDDNIVPQVFRDISSGLSELRRQLNQLESNGSDDMTTKQEPLESEIVQLEDPAESFIRDLLVASGLYFGSWDKSLLRGDSLAKPIGNSVFKEVEASGERSINENYEDSIKDRNENMINKRVLLDLLNEALSVVLGPSLTLSRFRRKVSNTSMMMAPPCGKELLKSVWEIISASLYPQCDEIYPYSLDDLVAQHLGSVPWSGLVSEEINVLERDVECMITNDLVEELTKDMLLFRPQSNQQQTSLITRNSTNST* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0278 919 Pfam DUF761-associated sequence motif 94 110 IPR032795 -
Amo05g0278 919 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 897 - -
Amo05g0278 919 Pfam Domain of unknown function (DUF4378) 721 891 IPR025486 -
Amo05g0278 919 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 897 - -
Amo05g0278 919 Coils Coil 676 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0278 Amo-Chr5 3542319 3547275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0278 76 896 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 41.893 2.45e-159 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0278 - - adu:107487403 1795.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0278 05 3542319 3547275 Amo01g0970 01 12824445 12827819 PCT
Amo01g0970 01 12824445 12827819 Amo05g0278 05 3542319 3547275 PCT