Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0276 ATGATCTGTGGCGCGGCTGCTGGTGTTGCTGCTGCCTTTCGCGCACCAGTAGATGTAAGAGTTTACGTTGCTTTGATCATCAATGTGTGGAGGAGTGCTCTTTGGTGGAGGACATTTTTCACCACAGCAGTAGTTGCTATTGTTTTAAGAGCTGCAATTCAGCTTTGCGCCACCAGGAAATGCGGCTTATTCGGAGAAGGTGGTCTGATAATGTATGATATTGGTTCTTCCCAAGGTCCCGAATTCTACGCTGACAAATCCTGCCACAGCCTTACACGCCGCCGTCGCCAGCCGCCACCAGTGGGAGCAAGGACGCCGGAACCATTCTTTCTTGCTCCATCTTGCGACTTGTGCCTTGCGAGGCGCTTCTCTCTGCCTCTCTCACAGTGCAAGTCTAAGAAAGAATTTTCTGATTATTTATATATCTTTTCCGTTTTGCCTTTTGGTTACAGAATGGTAAAATTCACGATGAGTAAGGGCAGATATACGTATACCCATGATCAGAAATATCCCTGCGAAAATGTCGACATACACCACATAATTTTGAAGAGTGGTAGGGCAAATTATGTCTTTGTATACACCTCAGCAGTTCTTGTATTAGCTTCTGCCTTATATCTCTATATTCTTGGGGAAAAATCAATTAGTATTGTATATTACAGCCTGCTTTTCGACATATTTCTTGTCAAGTTATTGCTTCGAAAGCCTGTTAAGAAAGAGTCTGTTGTAATTATGCCAGCTTTTGGAGTACAGCTTGAGACTCACTACATGAGTGGAAAAATCGTTAGATGCTTTGTTCCCATTGACAAGATTCTGAAACCTGTTCTAGTAGAATGTGTGACACCAGTGACTTGTTACTGGACACTATCGTTGATGATTCGTGGGGAATCGGAAATGGTATTAGTTTTCAAGAGCTTGCATCCACCAGTGAAAATGCTGGTCCATGTATGGAAGGCCCTGTGTGCTGCAACTGATATCAAGGAAGAGGCTTTGAACACATGCACAACCAACAATTGA 1014 0.4359 MICGAAAGVAAAFRAPVDVRVYVALIINVWRSALWWRTFFTTAVVAIVLRAAIQLCATRKCGLFGEGGLIMYDIGSSQGPEFYADKSCHSLTRRRRQPPPVGARTPEPFFLAPSCDLCLARRFSLPLSQCKSKKEFSDYLYIFSVLPFGYRMVKFTMSKGRYTYTHDQKYPCENVDIHHIILKSGRANYVFVYTSAVLVLASALYLYILGEKSISIVYYSLLFDIFLVKLLLRKPVKKESVVIMPAFGVQLETHYMSGKIVRCFVPIDKILKPVLVECVTPVTCYWTLSLMIRGESEMVLVFKSLHPPVKMLVHVWKALCAATDIKEEALNTCTTNN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0276 337 Gene3D Clc chloride channel 1 84 - -
Amo05g0276 337 SUPERFAMILY Clc chloride channel 2 55 IPR014743 -
Amo05g0276 337 Pfam GPI-GlcNAc transferase complex, PIG-H component 240 303 IPR019328 -
Amo05g0276 337 PRINTS Plant CLC chloride channel signature 58 65 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g0276 337 PRINTS Plant CLC chloride channel signature 26 34 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g0276 337 PRINTS Plant CLC chloride channel signature 40 50 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g0276 337 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H 155 326 IPR044215 GO:0000506|GO:0006506
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0276 Amo-Chr5 3398567 3402485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0276 3 85 Ion Channels AT5G33280 58.333 1.60e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0276 K03858 - gmx:100795421 274.248