Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0274 ATGCAACAATTCACAATTAACGCAAACCAACTGTTTGATGAAATGACTAAGACAGAAAATATAAAAAATGATGTGCCCAAGGTTGGCATGTGTTTTGGAACCATTGAAGATGCAAATCAATTTTATCAGAATTATGCCAAGCGCGTTGGTTTTGTTACTAAGATAAGGTTTACCCGAAGAGTTGGTAAAGATAAGGTTCCTAAGAATCAAATGATCACTTGCAATAGGGAGGGAAAACGCAAGTCTAGAGTTTCACCAATAGAAAAGACCAACCCTAGAACCAACTACAATTGCCCTGCAAGGATTTCTATTAGGTTGAATAAGGAGGGTCTTTGGATTATATCGAAGGTGTGCTTGGATCATTCACATCCTTGTGATCCAGAGATGGCAAAACTGTTGACACGTAATAGAGAGATGACTATGCACATGTGTCGAGTCATTGAGAGGAATGATGAAGCAGGTGTGAGACCAAGCAAAACATATCAAGTATTGGTGGGTGAAGCAGGAGATATCTATGAAGAAAGACATCGATGGGTTCCAATTTTTCTTGACAACTTTTTTTGGGCTGGTATGAGATCCACACAACGAAGTGAGAGCATGCATTCATATTTTGACAAATTTATAAATAACAAGAGCTTGTTGATTCAATTTGTCAAACAATATGACAATTGCCTTGGATGGAAAGAGCAACAAGAAAGGGAGGCTGATGTTGAAGACTATAAATCAATAATACCTTGTGCCACTAATTCCTTAATAGAGAAGCAATTTCAAGGTGCCTATACTAATGCAAAGTTTAAGGAAGTACAAAAGCAATTTAGAAAGAAAGCAAATTGTATTTTGCACCTTATGAAAGCAGTTTCTACATCTAAAGTCTATTCTATTTTGGAGGATGTATCTACTTCTAAAGAGAGGGTTTATGAAGTTAACTACAATGCGGAAACGAAGGATATTACATGCATGTGTCAAATGTTTGAATCAAGAGGCATATTATGCCGTCATAGCTTGGTTGTCCTAGGGCATGAACGCGTGAGAGAAATTCCAAGAAGATACATTTTGGACCGTTGGAGCAAACTTGTGAAGCGAAGACATAGTGATATTAAGAGCAGCCATGATCCAAGTTTGTTGAATCCAAAAACAGAGAGGTTTGATGATTTATGCTCCCATTCGAACAGTGTTGCTCAATTTGCATCCCAAACAAAGGAAACAAGTGATATCTTACATCGTTATCTTGATATGGCTATGGCGGAGTGTCAAAAGCATGTTGCTAACTCATCATCTAATGCCAATGAGTTAGATAATTTGCTTACATCAGAAGATGGTGGTAAAGATGGTGGTAAAGATGCACTGTCCATTTTTGTAGGAGGCTGTATAATAAGCATTCAAGATATTAAAAGCCCTCCTTATGTGTTCACTAAGGGTCGTCCAACAAATAGGTTAGGATCTGAAAAAGACAAGATGATAAAAAAGAAGACCGAGGCAAAGAAGAGGAAAAGTGAGATAACCGAAAAAGAGGATAATCAACATATTGGAGATATTCAAAGTCTCCCTTTCAACGAACAGCTTCAAGATGCTAACTACAATGTTAATGAGGGATTTGAATCTGATTCAATGGGAGCATCAATGGGAGGATTCATGTCCTTATTGAACTCAATCCATTCATACCAATTCTCAAATGTCGATTGA 1683 0.3743 MQQFTINANQLFDEMTKTENIKNDVPKVGMCFGTIEDANQFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSPIEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCDPEMAKLLTRNREMTMHMCRVIERNDEAGVRPSKTYQVLVGEAGDIYEERHRWVPIFLDNFFWAGMRSTQRSESMHSYFDKFINNKSLLIQFVKQYDNCLGWKEQQEREADVEDYKSIIPCATNSLIEKQFQGAYTNAKFKEVQKQFRKKANCILHLMKAVSTSKVYSILEDVSTSKERVYEVNYNAETKDITCMCQMFESRGILCRHSLVVLGHERVREIPRRYILDRWSKLVKRRHSDIKSSHDPSLLNPKTERFDDLCSHSNSVAQFASQTKETSDILHRYLDMAMAECQKHVANSSSNANELDNLLTSEDGGKDGGKDALSIFVGGCIISIQDIKSPPYVFTKGRPTNRLGSEKDKMIKKKTEAKKRKSEITEKEDNQHIGDIQSLPFNEQLQDANYNVNEGFESDSMGASMGGFMSLLNSIHSYQFSNVD* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0274 560 Pfam FAR1 DNA-binding domain 40 126 IPR004330 -
Amo05g0274 560 SMART 26again6 317 344 IPR006564 GO:0008270
Amo05g0274 560 Pfam SWIM zinc finger 306 339 IPR007527 GO:0008270
Amo05g0274 560 MobiDBLite consensus disorder prediction 487 512 - -
Amo05g0274 560 ProSiteProfiles Zinc finger SWIM-type profile. 306 342 IPR007527 GO:0008270
Amo05g0274 560 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 138 IPR031052 GO:0006355
Amo05g0274 560 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 171 426 IPR031052 GO:0006355
Amo05g0274 560 MobiDBLite consensus disorder prediction 487 509 - -
Amo05g0274 560 PANTHER OS03G0843700 PROTEIN 13 138 - -
Amo05g0274 560 PANTHER OS03G0843700 PROTEIN 171 426 - -
Amo05g0274 560 Coils Coil 483 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0274 Amo-Chr5 3379642 3383113 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g0274 FAR1 7.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0274 - - ahf:112717726 762.681