Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0270 ATGTCGTGCTCATCGTCGTCGGGGTCGGAGGAGGACGATGAGGGTTTCGATTCGTACCGGAAAGGAGGGTACCATGCCGTCAGAATCGGCGATCAGTTCGCCGGTGGAAGGTACATAGCTCAGAGGAAGCTCGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCTTACGACACCACCAATTCCTCATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCCCAGTTTGTTCAGGCAGCACTTCATGAGATTGATGTTCTTTCATACATTGCTAAGGGTGACCCTTCAAATTCGAAGTTTGTTGTTCAATTAATTGACCACTTTAAACACACTGGCCCGAATGGGCAGCACCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTACGTCTGATCAAATATAACCGATACAAATGCCTTCCATTGAATAAAGTTAGGGAAATGTGCAAATACATTTTGATTGGTTTGGATTACTTGCACAGAGAACTTGGTCTAATCCACACTGACCTCAAACCTGAAAATATTCTTCTACTTTCAACCATTGATGCTGCCAAAGACCCTTTTAAATCTGGACAATCTCCAATTCTGGAGAGGCCTGAGGGAGGCATCAACGGTGGAGTCACAAGTCTTATTGAGAAAAGATTGAGAAGGAGAGCTAAGAGGGCTGTTGCTAAGATATCCGAAAAAAGATCCTCAATGGGTGTAGCTGGAGAAGAGCAAAAGTCTACTAGAAACATTGATGGGATTGATATGAGATGCAAGATTGTAGATTTTGGAAATGCATGTTGGGCTGACAAGCAGTTTGCTGAAGAAATACAGACAAGGCAATACAGAGCTCCTGAAGTTATACTGCAGTCCGGCTATTCCTTCTCTGTCGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGTGATATGTTGTTTACGCCCAAGGGTGGTCAAGGTTTTAGTGAAGATGAGGATCATCTCGCCTTGATGATGGAGCTCCTCGGAAAGATGCCCCGGAAGATTGCGATTTCTGGAGCACAATCCAAGGAATTCTTTGACAGGCACGGTGATCTGAAAAGGATCCGGAGGCTAAAATTTTTGGCACTTGACAAATTGCTGATTGATAGATATAAGTTTCCAGAGACTGACGCACGCGAGTTTACCGAATTTCTTACACCACTTCTTGATTTTGCACCGGAGAAGCGACCAACTGCACAACAGTGCTTGCAACACCCATGGATGAATCGTGAGTTATCTCCGAACGAGAATGAGTCTAGTGTGGAAACCGTGGAAGTTGGGATGAGCAACCTTAAACTCAAGGTGGGAAAGTGA 1329 0.4522 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTNSSYVALKIQKSAAQFVQAALHEIDVLSYIAKGDPSNSKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKCLPLNKVREMCKYILIGLDYLHRELGLIHTDLKPENILLLSTIDAAKDPFKSGQSPILERPEGGINGGVTSLIEKRLRRRAKRAVAKISEKRSSMGVAGEEQKSTRNIDGIDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAISGAQSKEFFDRHGDLKRIRRLKFLALDKLLIDRYKFPETDAREFTEFLTPLLDFAPEKRPTAQQCLQHPWMNRELSPNENESSVETVEVGMSNLKLKVGK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0270 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0270 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Amo05g0270 442 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 442 - -
Amo05g0270 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0270 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Amo05g0270 442 SUPERFAMILY Protein kinase-like (PK-like) 32 421 IPR011009 -
Amo05g0270 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Amo05g0270 442 CDD STKc_SRPK 27 413 - -
Amo05g0270 442 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 442 - -
Amo05g0270 442 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0270 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0270 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0270 Amo-Chr5 3347944 3351991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0270 4 414 EF-hand Containing Proteins AT5G22840 51.509 1.05e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Amo05g0270 Pkinase 5.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0270 K08832 - gmx:100784192 718.768