Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0266 ATGGCTTTTCAGGCAACTGGTCTAAACATGGTTAAAGTTTGGTTCTTGGTGTTGATTATTCTCTCCAATGGATTCTATTCAAATGGGGCAGACATGCAAAATTTCACAGTACCTGAGGTTGTAAATATTGGGGCTCTCTTCTCTTTCAATGGCTCTTTTGGTAGAAGTGTAAAATTTGCTATAAAGGCTGCAGTTGATGATGTAAATTCTGATCCATCAATTCTTGGTAAAACAAAGCTGAATCTCATACTGCAAGAGGACACAAAATACAGAGGTTTTCTTAGCATTTCTGAGGTTTTGCAGGTTGCAACGAGACATACTGTGGCTATAATTGGTCCCCAGTCATCTGTTACAGCTCATGTCATAGCTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTATCGTTTTCGGCTTTAGACCCTACCCTTCATTCACTTCAGTTTCCATTCTTTATTAGAACAGGTCATAGTGATCTTTATGTGATGACTGCAATAGCAGACTTTGTTGATCACTTTGGGTGGAAAGATGTTATTGCTTTCTATGTGGATGATGATAATGGGAGGAATGGAATCGGAGCTCTAGGCGACAAGCTCGCCGATAGGCGTTGCAGGATCTCGTTTAAGGCAGCTGTGAGTCCTGATGCAACTGATGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTTTGGCAGAGTCAAGAGTTATAGTTCTTCACCTCAACACTGTTTGGAAACTCAAGGTTTTCAATCTTGCAAAGAATCTTGGGATGATGGAAACTGGTTATGTCTGGATAGGTACTACTTTTCTTTCTGCTGTGCTTGATATGGAAAGTCCCTTGTCTTCAGATAAAATGGATGATATTCAAGGAGTTATTACATTTCGTGTTTACACACCGGATTCTGAACTCAAAAGAAGGTTTGTTTCTAAGTGGAAGAATTTGACTCAAGCTGATAGTGCTAATGGAGGCCCTCTTGGTTTTACTCCTTTAATTCTATATGCTTATGATACTGTTTATGCTCTTGCACATGCACTTGATTCGTTTTTCAAACAAGGGAACAGAATCACTTTCTCAAATGATTCAAAGTTATCAGTGTTACAAGGTGACAACTTGCATCTTGATGCCTTGAACATCTTCAATGAAGGACCTTCCTTGCGGCGAAGCATTTATGGGGTTAACATGACCGGTGTGACAGGTCCATTCAGCTATACATCTGATGAAAATCTTGCCAATCCTGCATTTGAGATCATCAATGTAATTGGAACAGGCTCTAGGAAGATTGGTTATTGGTCTAACTACTCTGGATTATCAGTTCTTCCTCCAGATACTCTTTATTCCAAGCCTGTTAATAATTCCAGGGAAAGTAAAACTTTACTTCCAGTGATTTGGCCTGGAGACACTGATCAAAAGCCCCGTGGTTGGGTTTTTCCCAACAGTGGAAGGCTACTAAAGATTGGAGTACCAAGAAGGGTTAATTACCATGAATTTGTGTCACCGGTAAAAGGCACTGATATGTTTCAGGGATTCTGCATTGATGTGTTTCTTGCTGCAGTGGATTTGTTGCCTTATGCTGTTCCCTATAAGTTTGTCCCCTTTGGCGACGGTCGCATCAATCCTAGCGCCACAGACCTTGTCCGTCGGATCACAACCGGTGAATTTGATGGTGCTGTTGGTGACATTGCCATTACTACAGAAAGAACAAGGATGGTGGATTTTACACAGCCTTATATTGAGTCTGGTCTAGTTGTAGTTGCACCAGTTAGGAAGGCAGAATCCAATGCTTGGGCGTTTTTGTCACCGTTTACGCCCATGATGTGGGCTGTCACAGCTATGTTTTTCTTGTTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGACTTTAGGGGACCTCCCAAGAAACAAGTAGTTACTATCTTATGGTTCAGTTTTTCAACTATGTTCTACTCACACAGGGAAAATACAGTTAGCACTCTCGGTCGCTTAGTGCTGATTATATGGTTATTTGTAGTTCTTATAGTTAACTCGAGTTACACAGCGAGTCTAACCTCAATCCTCACAGTGCAACAACTTTATTCACCCATCAAAGGCATTGAAAGTTTGGTAAATAGCAAGGATCCTATTGGTTACACTCAAGGTTCTTTCGCGAAAAATTATTTGATTCAGGAAATTGGCATTGCTGAATCGAGGCTGGTTCCTTTGAACACACCGGAGGAAGCTGCTAATGCTCTTAAAAAGGGTCCCCATGGTGGTGGTGTCTCTGCATACATTGATGAACGTTCCTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTCACTGTTATTGGTCAAGAGTTCACTAGAGATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCTTTAGCAGTAGACCTGTCAACAGCAATTCTGGAAATGGCAGAGAATGGAGACCTACAAAGGATCCATGACAAGTGGCTTCTGCGCAGCGCCTGCTTGTCGCAGGGGACGAAACTGGAAGTGGAAAGACTAAACCTTCAAAGCTTCTGGGGCCTCTATCTGCTATGTGGCTTTGCCTGCTTCATTGCTCTCTTGATATATCTCATACAAGTGACTAGGCAGTACTTCAAGCATGGCTCTGATGAACTTGACCCTTCAGAGCAGGGCTCATCTTCAGGATCTGCGCGCCTTCGGAGCTTCCTTTCATTTGTGGATGAAAAGGAGGAGACAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAAGATCTCATACAGAAGCAGCATTGGATCATCTATGAGCTCAAACAAAGACTATGCTCAATCTTCTCCATACAAAAATTTTTGTGCTAATGATGCTCAATCTTCTCCACACACAACTGATTGTGCTAATGAAGCATGA 2886 0.4231 MAFQATGLNMVKVWFLVLIILSNGFYSNGADMQNFTVPEVVNIGALFSFNGSFGRSVKFAIKAAVDDVNSDPSILGKTKLNLILQEDTKYRGFLSISEVLQVATRHTVAIIGPQSSVTAHVIAHIANELQVPLLSFSALDPTLHSLQFPFFIRTGHSDLYVMTAIADFVDHFGWKDVIAFYVDDDNGRNGIGALGDKLADRRCRISFKAAVSPDATDEEITDVLVQVALAESRVIVLHLNTVWKLKVFNLAKNLGMMETGYVWIGTTFLSAVLDMESPLSSDKMDDIQGVITFRVYTPDSELKRRFVSKWKNLTQADSANGGPLGFTPLILYAYDTVYALAHALDSFFKQGNRITFSNDSKLSVLQGDNLHLDALNIFNEGPSLRRSIYGVNMTGVTGPFSYTSDENLANPAFEIINVIGTGSRKIGYWSNYSGLSVLPPDTLYSKPVNNSRESKTLLPVIWPGDTDQKPRGWVFPNSGRLLKIGVPRRVNYHEFVSPVKGTDMFQGFCIDVFLAAVDLLPYAVPYKFVPFGDGRINPSATDLVRRITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKAESNAWAFLSPFTPMMWAVTAMFFLFVGAVVWILEHRVNDDFRGPPKKQVVTILWFSFSTMFYSHRENTVSTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPIKGIESLVNSKDPIGYTQGSFAKNYLIQEIGIAESRLVPLNTPEEAANALKKGPHGGGVSAYIDERSYIELFLSSRCDFTVIGQEFTRDGWGFAFPRDSPLAVDLSTAILEMAENGDLQRIHDKWLLRSACLSQGTKLEVERLNLQSFWGLYLLCGFACFIALLIYLIQVTRQYFKHGSDELDPSEQGSSSGSARLRSFLSFVDEKEETVKSRSKRRQMEKISYRSSIGSSMSSNKDYAQSSPYKNFCANDAQSSPHTTDCANEA* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0266 961 PANTHER GLUTAMATE RECEPTOR 16 940 - -
Amo05g0266 961 MobiDBLite consensus disorder prediction 919 936 - -
Amo05g0266 961 Pfam Receptor family ligand binding region 60 420 IPR001828 -
Amo05g0266 961 Gene3D - 482 592 - -
Amo05g0266 961 Pfam Bacterial extracellular solute-binding proteins, family 3 502 822 IPR001638 -
Amo05g0266 961 MobiDBLite consensus disorder prediction 906 936 - -
Amo05g0266 961 SMART GluR_14 483 824 IPR001320 GO:0015276|GO:0016020
Amo05g0266 961 Gene3D - 593 721 - -
Amo05g0266 961 Gene3D - 765 829 - -
Amo05g0266 961 CDD PBP1_GABAb_receptor_plant 42 437 IPR044440 -
Amo05g0266 961 Gene3D - 157 435 - -
Amo05g0266 961 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 940 - -
Amo05g0266 961 SUPERFAMILY Periplasmic binding protein-like II 456 824 - -
Amo05g0266 961 PIRSF IGluLR_plant 8 958 IPR017103 -
Amo05g0266 961 SUPERFAMILY Periplasmic binding protein-like I 36 474 IPR028082 -
Amo05g0266 961 Pfam Ligand-gated ion channel 823 855 IPR001320 GO:0015276|GO:0016020
Amo05g0266 961 CDD GluR_Plant 482 822 - -
Amo05g0266 961 Gene3D - 59 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0266 Amo-Chr5 3316743 3320670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0266 14 923 Ion Channels AT3G51480 58.068 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0266 K05387 - gmx:100785258 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0266 05 3316743 3320670 Amo01g0978 01 12890551 12894950 PCT
Amo01g0978 01 12890551 12894950 Amo05g0266 05 3316743 3320670 PCT