Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0264 ATGAAAATTTGTCTCTTCATCTTCCATTTCTTCGTGTTGTCGATTCTCGCAGCTCAAATATCCTTCTCAGATTCACACGCCTCTGACCTCTCTCTTCTCCACCACCATACCAACCGTCAACCTGCTACGGGCCTCATTGCAGCCCTAGATGGCACTCTCTATCTGCTCGACACTGATTCCGGCAGGGTAATTTGGTCATTCTCCACCGGTTCCCCCATCTACCATTCCTACCTGGCACCTCTCAATTCCGCCAATGAATCTGGACTCATCGAATGCGGTGATGATTGGGAACTCATCCTTCATCACAACCACTTTGGTAAAACGAGGCTCTCGGAATCTATTGCTGATTATGTTGCGGATACGCCTGTTATGTCAGAAGATGGGGCAGTTGTTCTTGGATCCAAAAGAACAACTGTCTTTGAAGTTGATGCTAAAACCGGAAGGCTTGTAAGAAGTTATACCACTGCAGCCTTTGATGATTCGTCCGCCGCCGGCTGGAGTGATGACAGGAAGAATGTGGCTACTGACATTGGTACAAGCAGTAGTGAGCTTGCTGATCCTGCACAGCTTAATCCGCCGGAGTTTTTACTCAAGATATTTAGGACTGATTATCTTTTGCAATCTGTTGGTCCTGGATCTGGAATGGTTTTGTGGACCATGAAAGTAGCTGAATTTAAGGCTGTATTACATTGCCAACATGATGAGTATCCTTCTGACCGGGTGTCATTCGAGGCAGGAGGTCAATATGCTTTCGACAGTGGCTTACGTTTTGCTATGCCGTATGCATGTCATGACAGAAAACTAAAAGATGTCTATCGCCAAAGGAAGAATTTTCTGCTAGAACATGGCAACTCTGAAAGATTATCCGAGGGTTATCAAGAGTTTGATATGCTCCCAACCCCTTCTTCAGAACTGATGCTTCCATTGCAACCTAACAAAAATAGGGTTCCCCATGGTCCTAATAGTAAAATGATGCTTCCTGGGGCCGTGCTAAATCATTTGCCTGCTTTGCCACCAAAAATCAACTATGATAACAATGATCATGCAGTAATGCTCCACCGGTTTCCTATGGATATGGCTGGACCTGGTAAAATTCATGTGAGCAAGGGGATTGAATGGTCAACAACATCAGCTCTTATATTGTTTATAGGATTTATCCTCTGCATTTTGATCTTTTGCTTCTGCCTTAAGAAAAAGAGAGTGCAGAAGGACCAAAACATTGAGGCAATTTTAAAAAGTCCTTCTTCTAAGAAAAAGAGAGCACGTAAGTCTGGAAGGAATGCCATCGTTGTTGACAAACAGGATAGGAATTCATTGCCAGCTGAGGAGGATATACTGACAAATAATGTTGATGGACGGAAGATTGGTAAACTAATTGTACTAAACAAAGAAATTGCTAAGGGTAGCAATGGTACCATTGTTCTGGAGGGGATATATGAAGGTCGGGAAGTTGCTGTCAAACGTCTTGTTCAAGCTCATCATGATGTAGCCAGCAAAGAAATCCAAAACCTTATTGCATCTGATTGCCATCCAAACATTGTTCGATGGTATGGGGTCGAATATGATAATGATTTTGTTTATCTTGCTTTGGAGCGTTGTATATGCAACTTGGATGATTTGATTCAAAATTACTCTGATATATCAGAAAACCCAGTGCATAGCAAGGATCAAGGTTCTAAGATTGTTATAAAGGCTCAGGTGGAGACAGGGAAGGATGACGTGCAATATCTTTGGAAAGCAAGTGGCCATCCATCATCGCTATTACTTAAACTAATGAGGGATGTAATTTCTGGGCTTGCTCATTTGCATGAACTAGGAATAATACACCGGGATTTGAAACCCCAAAATGTTTTGATAACCAAAGAAAGATCACTATGTGCAAAGCTTTCTGATATGGGAATTAGCAAACGCCTTCTTGAAGATATGTCTACGTTGGGTCATAGTGTTACTGGATGTGGGAGTTCAGGGTGGCAGGCACCAGAGCAGCTTGTTCAAGGACGCCAATCACGAGCTTTAGATTTGTTTAGTTTGGGATGTGTCCTATTTTTCTGTATGACTGGGGGAAGACATCCATTTGGAGAGCGCCTTGAGCGCGATGTTAATATTCTAAAAAATCGAAAGGATCTCTTTTTAATAGAGTCCATTCCAGAGGCAGAGGACCTTATCTCTCGTTTATTAAACCCTGATCCGAATTTAAGGCCAAAGGCAATTGAAGTGTTGCACCATCCTCTTTTCTGGAGTTCTGAGATGAGACTTTCATTTCTTCGAGACGCCAGTGATAGGGTGGAACTTGAGGACAGAGAGACTGATTCTGATCTTCTTAGGACATTAGAAAGCATTGCACCAATGGCTTTAGGTGCAAAATGGGACGAAAAGATGGAACCGGCTTTCATTACTAATATTGGTCGTTACAGAAGATATAAATATGACAGTGTTCGAGACTTATTAAGGGTCATGAGAAACAAGCTAAATCATTATAGAGAATTACCTCAAGAAATTCAGGAACTTGTAGGATCTGTTCCAGAAGGATTCAATGACTATTTTGCAAGTCGGTTCCCAAGGCTCTTGATTGAAGTATACAGAGTTATATACGAATATTGCAAGGAAGATCAATGTTTTCAAAGGTATTTTAGAGACAATTAG 2643 0.4185 MKICLFIFHFFVLSILAAQISFSDSHASDLSLLHHHTNRQPATGLIAALDGTLYLLDTDSGRVIWSFSTGSPIYHSYLAPLNSANESGLIECGDDWELILHHNHFGKTRLSESIADYVADTPVMSEDGAVVLGSKRTTVFEVDAKTGRLVRSYTTAAFDDSSAAGWSDDRKNVATDIGTSSSELADPAQLNPPEFLLKIFRTDYLLQSVGPGSGMVLWTMKVAEFKAVLHCQHDEYPSDRVSFEAGGQYAFDSGLRFAMPYACHDRKLKDVYRQRKNFLLEHGNSERLSEGYQEFDMLPTPSSELMLPLQPNKNRVPHGPNSKMMLPGAVLNHLPALPPKINYDNNDHAVMLHRFPMDMAGPGKIHVSKGIEWSTTSALILFIGFILCILIFCFCLKKKRVQKDQNIEAILKSPSSKKKRARKSGRNAIVVDKQDRNSLPAEEDILTNNVDGRKIGKLIVLNKEIAKGSNGTIVLEGIYEGREVAVKRLVQAHHDVASKEIQNLIASDCHPNIVRWYGVEYDNDFVYLALERCICNLDDLIQNYSDISENPVHSKDQGSKIVIKAQVETGKDDVQYLWKASGHPSSLLLKLMRDVISGLAHLHELGIIHRDLKPQNVLITKERSLCAKLSDMGISKRLLEDMSTLGHSVTGCGSSGWQAPEQLVQGRQSRALDLFSLGCVLFFCMTGGRHPFGERLERDVNILKNRKDLFLIESIPEAEDLISRLLNPDPNLRPKAIEVLHHPLFWSSEMRLSFLRDASDRVELEDRETDSDLLRTLESIAPMALGAKWDEKMEPAFITNIGRYRRYKYDSVRDLLRVMRNKLNHYRELPQEIQELVGSVPEGFNDYFASRFPRLLIEVYRVIYEYCKEDQCFQRYFRDN* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0264 880 SMART ire1_9 122 154 IPR018391 -
Amo05g0264 880 SMART ire1_9 37 68 IPR018391 -
Amo05g0264 880 SUPERFAMILY Protein kinase-like (PK-like) 461 749 IPR011009 -
Amo05g0264 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Amo05g0264 880 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 6 877 - -
Amo05g0264 880 Pfam Ribonuclease 2-5A 751 877 IPR010513 GO:0004540|GO:0006397
Amo05g0264 880 Pfam Protein kinase domain 462 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0264 880 SMART serkin_6 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0264 880 Gene3D - 38 250 IPR015943 GO:0005515
Amo05g0264 880 Gene3D Phosphorylase Kinase; domain 1 446 531 - -
Amo05g0264 880 PANTHER IRE1-RELATED 6 877 IPR045133 GO:0004521|GO:0004674|GO:0030968
Amo05g0264 880 ProSiteProfiles KEN domain profile. 748 879 IPR010513 GO:0004540|GO:0006397
Amo05g0264 880 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 161 IPR011047 -
Amo05g0264 880 SMART PGNneu 810 864 - -
Amo05g0264 880 Pfam PQQ enzyme repeat 48 74 IPR002372 -
Amo05g0264 880 Gene3D Transferase(Phosphotransferase) domain 1 579 747 - -
Amo05g0264 880 Gene3D KEN domain 748 880 IPR038357 -
Amo05g0264 880 CDD RNase_Ire1 749 877 - -
Amo05g0264 880 ProSiteProfiles Protein kinase domain profile. 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0264 Amo-Chr5 3305893 3310298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0264 485 744 MAP Kinase Kinase Kinase AT3G06030 26.515 6.25e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Amo05g0264 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0264 K08852 - gmx:102661527 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0264 05 3305893 3310298 Amo01g0979 01 12895456 12900825 PCT
Amo01g0979 01 12895456 12900825 Amo05g0264 05 3305893 3310298 PCT