Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0260 ATGACACGTGCTCTTAGATCCCTCACATCCACCGCCGACAACGCCACCGTCGTTGCCGCCGCTCCGCCTCCCGAGGCTGTGGCTCTTGAATCCGACTTCGTCGTCATCCTCGCAGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGTCTTGTCGCCGTCGCCAGGTGCGCCTGGCTCCGCCGAGGCTCCGCCGCCGGAGCCTCACCGCGTCAGGCTCTCGCCAACAAAGGATTGAAGAAGAAGGTTCTCCAGTCGTTACCAAAATTCGCCTACGTTGACGGAGGAGATCCAGAATCCGGATTCGGTAGCGGTGCCGGGTGGATGGTGACGGCGGAGTGCGCGATCTGCCTTTCGGATTTTGCCGCCGGCGATGAGATCCGCGTGTTGCCGCAGTGTGGCCACGGGTTCCACGTGGCCTGCATAGACACGTGGCTTGGATCACACTCTTCTTGCCCTTCGTGCCGACAGGTTTTAGCGGTTGCGAGGTGCCAGAAGTGCGGGAGGTTTCCCGCCACCGGAGCTGGAAGCTCCGCCGCAAGAGCATCGATCAATGAACCTGAGCTGAAGTCGAGAGAAGACGACAATGCCGTTTTTAACAATAACACTAATAACAGTAACAGTAATAGCGGCGGTTTCAGTTGTAATAGCAACAATAGTAGTAGCAACACCAGCAATAATAGTGGTTTCTTGCCTTGA 696 0.5747 MTRALRSLTSTADNATVVAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSAAGASPRQALANKGLKKKVLQSLPKFAYVDGGDPESGFGSGAGWMVTAECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGSSAARASINEPELKSREDDNAVFNNNTNNSNSNSGGFSCNSNNSSSNTSNNSGFLP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0260 231 SMART ring_2 113 154 IPR001841 -
Amo05g0260 231 MobiDBLite consensus disorder prediction 172 231 - -
Amo05g0260 231 SUPERFAMILY RING/U-box 86 160 - -
Amo05g0260 231 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 196 - -
Amo05g0260 231 CDD RING-H2_PA-TM-RING 112 155 - -
Amo05g0260 231 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 196 - -
Amo05g0260 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 160 IPR013083 -
Amo05g0260 231 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Amo05g0260 231 Pfam Ring finger domain 112 155 IPR001841 -
Amo05g0260 231 MobiDBLite consensus disorder prediction 195 231 - -
Amo05g0260 231 SMART FANCL_C_2 109 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0260 Amo-Chr5 3263481 3264873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0260 28 198 C3H Transcription Factor Family AT1G20823 58.011 3.67e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0260 - - adu:107487390 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0260 05 3263481 3264873 Amo01g0983 01 12956982 12957662 PCT
Amo01g0983 01 12956982 12957662 Amo05g0260 05 3263481 3264873 PCT