Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0245 ATGAGTGATGCGAAAGAAAATGAGGAAGTTGGCCAGGGCGTGCCCTCGGCTATGGAAGAAAACCAACACTTAGATGATGCCAATTTTCAAATTCAACCTGATGCTTCTTCTACTCCTGCTCCAGTAGAGGAAAGTCCAAATCACGTCAAAAACATATCGAAGGAGCCGCCTGTTGAGTCTAAGGCGGAGGCATCTGCTGAGTCTAAGACAGAGCCACCTGCTGAGTCTACGGCTGAACCACCTGCTGAGGTTATGGCAGAGCTGCATCCTGTGGCAAAGGCAGAACCACCTCCAGAGGCCAAGGCAGAGCCATCTCCTGAGGTCAAGGCTGAGCAACCTCTTAGAGCTGTGTCAGAGCCATCTGCTGAGGCTAAGTCAAAGTTACCTGCCCAGGCTACGGCAGTACCACCTGCGGAAGCTGAGGCAGATCCTCCTTCTGAGGATAAGTCTGAGCAACCTTCTGAGACTAAATCTGTGCTACCTGCTGAAGCTATGTCAGCACCAGATTCTGCGGACAAGGCTGAGCCACCACTTGAGGACAAAAGTGAGGATCAAGAGGTGGTTCCTGAGGGTATTCAACAGCAAGATATTCAAAGTAGTGAAAATACTCTTCAGTCAGTCACAGTAGAGCTTGATGTAAATAGAACTGATCGTGAGGAAGCTTCTGACCCGATGGAGGAAGCTAATGAAATTCCTCAGAGCAATAATGGTACAGAGGATGATGTGAATGTTTGTACAAATAATGCCAATGTTGCTGAAACAACAGCAGAAGTGAAGCCTGAAGATGGTGAAGTGGCTAATGCTGTTCCTGCTGATACAAATGTTGAAATCAAGAATATATTAGAAGTTGAGAATAAGACTGATGAAAATCAAGCTGCTGCAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCTTTTCTTGGACGCAGACCATTGTTATGATGGGAATGAGTCAGGGACGGAGGAAGAGCAATCAGCATTCATGAAGGAGCTTGAAAATTTCTTTAAGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCTCGTGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGTACCACAGTTTCATGGACTTTCCGTGGGTTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATCGAAAATCAGACTTCAGCATCAGGTAGAGCACGTAGAGATGCTGCAGCACGCGCTATGCGGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTCGGTGATCCCATTATTAAGGATAGGAATTCTGTGTCTATGCAAAAACGTGAAAAGGAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCATCGTATATGGACAATGCAGTCAAAGCTGCACGTAGTAAACCGTCTAAACCACAATTGGATACAGCTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGCTTTGAGGTATATGCTTTAGTTCCTGGTCTACTTCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTTATTAGTGGTGAGCCTGAGCATCTCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCGGTGGTAACTCTGCATGGACAGTTGTTTGTTCGGGTCCCATTTGAGCAATCAGAATAG 1857 0.4496 MSDAKENEEVGQGVPSAMEENQHLDDANFQIQPDASSTPAPVEESPNHVKNISKEPPVESKAEASAESKTEPPAESTAEPPAEVMAELHPVAKAEPPPEAKAEPSPEVKAEQPLRAVSEPSAEAKSKLPAQATAVPPAEAEADPPSEDKSEQPSETKSVLPAEAMSAPDSADKAEPPLEDKSEDQEVVPEGIQQQDIQSSENTLQSVTVELDVNRTDREEASDPMEEANEIPQSNNGTEDDVNVCTNNANVAETTAEVKPEDGEVANAVPADTNVEIKNILEVENKTDENQAAATADNGNENSSHMLFLDADHCYDGNESGTEEEQSAFMKELENFFKERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELSVPIPSQPEPMNIENQTSASGRARRDAAARAMRGWHSQRLLGNGEVGDPIIKDRNSVSMQKREKEQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0245 618 MobiDBLite consensus disorder prediction 188 211 - -
Amo05g0245 618 Gene3D - 517 618 IPR008978 -
Amo05g0245 618 MobiDBLite consensus disorder prediction 173 187 - -
Amo05g0245 618 SMART bright_3 324 415 IPR001606 GO:0003677
Amo05g0245 618 Pfam ARID/BRIGHT DNA binding domain 326 410 IPR001606 GO:0003677
Amo05g0245 618 SUPERFAMILY HSP20-like chaperones 527 614 IPR008978 -
Amo05g0245 618 MobiDBLite consensus disorder prediction 228 243 - -
Amo05g0245 618 CDD ARID 325 410 - -
Amo05g0245 618 MobiDBLite consensus disorder prediction 23 44 - -
Amo05g0245 618 Gene3D - 323 420 IPR036431 GO:0003677
Amo05g0245 618 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 518 618 IPR002068 -
Amo05g0245 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 100 617 IPR045147 GO:0006357
Amo05g0245 618 SUPERFAMILY ARID-like 318 421 IPR036431 GO:0003677
Amo05g0245 618 ProSiteProfiles ARID domain profile. 323 414 IPR001606 GO:0003677
Amo05g0245 618 MobiDBLite consensus disorder prediction 1 243 - -
Amo05g0245 618 CDD ACD_sHsps_p23-like 537 613 - -
Amo05g0245 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 100 617 - -
Amo05g0245 618 Pfam Hsp20/alpha crystallin family 535 617 IPR002068 -
Amo05g0245 618 MobiDBLite consensus disorder prediction 94 108 - -
Amo05g0245 618 MobiDBLite consensus disorder prediction 48 68 - -
Amo05g0245 618 MobiDBLite consensus disorder prediction 420 439 - -
Amo05g0245 618 SMART ARID_2 320 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0245 Amo-Chr5 3118239 3123650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0245 256 616 ARID Transcription Factor Family AT1G76510 54.592 7.90e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo05g0245 HSP20 4.1e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0245 - - gmx:100791081 689.493