Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0242 ATGGAGTTTGAATCTCTGAGTCTGGCCAATGAGGTCATTGAATTTGATATGATTGGTTTGGGGGATGATGGTGCCATTGATATTGAACATCATGTTGAAGATGATGATGACTATATCAGTGTTGACAATGTTTTTGCTGCTACTGCCGCCACCAATATAGCTGCCACTGTTGGACCTCAAATTCCTATAGGGGACACAAATCTTGAACCTTATCAGGGCATGGAATTTGAATCAGAAGAGGCTGCTAAGGCGTTTTATAATTCCTATGCTCGCCGCATTGGATTTAGTACGAGGGTGAGTATGTCCCGTCGCTCCAGACGTGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTATGGAGAAGGAGAAGAATTCTCTTGATGGCAGAGTCAAACGACCTCGTGCTGAAACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGTGTCTGGCAGATGGGTTGTTTCTTCATTTGTCAAGGAGCACAACCATGAATTGGTTCCACCTGATAAGGGTGCTGGAATAGGGCCTAGTGGAATTATGTCTGCACTTATCAAAGAATATGGTGGAATTAGCAACATTGGGTTCACTGAGCGTGACTTTTTGAACACACCATCACCTATGGAGAAACAAGCAGCTGGGATTTACACAAAGAGATTGTTTATCAAATTTCAAGAAGAGTTGGTTGAGACATTAACTTATTTGGCAAACAAAGTAGGTGAAGAAGAAATAACTTCTGTGTATAGAGTAGCCAAATATGGGGATATTCATAGGGCTTACTTTGTCAGATTTAACTCTTTTGAGATGAAGGTTACTTGTAGTTGCCAGATGTTTGAGTTTTTGGGTCTGGTTTGTAGACATATACTGACTGTTTTTAGGGTGACAAATATTCTTACTTTACCTTCTCATTATATTCTAAAAAGATGGACCAGGAATGCTAAAAGTGGAGTCATCTTGGATGAACACACCCCTGATTTGCTAAATGGTGCACGAGAATCTCTAACTATACGATATAATAATCTTCGTCATGAGGCCCTTAAGTATGTTGATGACGGAATAAGGTCTCCAAGAGTTTACGATGTTGCTATGAGTGCGCTACAGGAGGCTGCAAATAAAGTGGCACGAGCGACTAAGAATGATGGAAGACTGGTCATTTCAAATGGAACTTATAAAGAAGATTTACGGTGGAACAATGAAGCTACTACAAGTTACAGGGATCCTCAAACCAGTTTGCAACAATCTTCATCCAAGGATGACCACGACAGAACAATTGAGAAGTTGACAAGACAACTTGACCGAGCTCAAAGGAAGTGTGAAGTTTATAGGTCAAACTTGCTGTCAATTCTAAAAGACATGGAAGAGCAGAAGCTAGAATTATCAGTAAAAGTCCAAAATATCAAGTTAGGGATGAAAGATTGA 1443 0.4047 MEFESLSLANEVIEFDMIGLGDDGAIDIEHHVEDDDDYISVDNVFAATAATNIAATVGPQIPIGDTNLEPYQGMEFESEEAAKAFYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMEKEKNSLDGRVKRPRAETRVGCKAMLVVKIQVSGRWVVSSFVKEHNHELVPPDKGAGIGPSGIMSALIKEYGGISNIGFTERDFLNTPSPMEKQAAGIYTKRLFIKFQEELVETLTYLANKVGEEEITSVYRVAKYGDIHRAYFVRFNSFEMKVTCSCQMFEFLGLVCRHILTVFRVTNILTLPSHYILKRWTRNAKSGVILDEHTPDLLNGARESLTIRYNNLRHEALKYVDDGIRSPRVYDVAMSALQEAANKVARATKNDGRLVISNGTYKEDLRWNNEATTSYRDPQTSLQQSSSKDDHDRTIEKLTRQLDRAQRKCEVYRSNLLSILKDMEEQKLELSVKVQNIKLGMKD* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0242 480 MobiDBLite consensus disorder prediction 406 422 - -
Amo05g0242 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 209 455 - -
Amo05g0242 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 42 180 - -
Amo05g0242 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 209 455 IPR031052 GO:0006355
Amo05g0242 480 ProSiteProfiles Zinc finger SWIM-type profile. 268 304 IPR007527 GO:0008270
Amo05g0242 480 SMART 26again6 279 306 IPR006564 GO:0008270
Amo05g0242 480 Coils Coil 425 452 - -
Amo05g0242 480 Pfam FAR1 DNA-binding domain 85 176 IPR004330 -
Amo05g0242 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 180 IPR031052 GO:0006355
Amo05g0242 480 MobiDBLite consensus disorder prediction 406 431 - -
Amo05g0242 480 Pfam SWIM zinc finger 276 302 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0242 Amo-Chr5 3085587 3088837 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g0242 FAR1 1.1e-34 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0242 - - gmx:100782414 418.698