Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0235 ATGGTGTGGGTGGAGTACGATGGTGTAAAGAAGGAGATGGAGGTGTACATGGCGGAGAGTCAGTATCATTACGATGGCCCCATAGTAGCGGAAAAGCCATCGAAGGCAGTATTGAGTTCGCATCTAGACCTGAAAGGTTTGGTGAATGACATGTCATATTTTGGGTTCTCGGCTTCCACCGGCAATTATTACGAGTTGAACGCAATATTTAGATGGAACTTGTCGGTGGAGGTTCTACCTAATTATAGTATGAGTAGTGCAAGAAATGATAATTACTGGTGGAAGACCGGCGTAGGTGTTGGTGTGGGAGCACCTCTTTTGGCTTTGCTTATTACCGGTGTTATGCATTTCCTACGCAGGAAGATAAGGGAAAGTGGATCGGACCCGAAATTGTTGAGCACACTGAAGAGATTGCCAGGGACTCCCAGCGAGTTCAGGTTCCGGGAACTCAAGATTGCCACCAACAATTTCCATGACAGCAACAAGCTTGGTCAAGGTGGCTTTGGCATCGTTTACAGAGGAACACTGCCGAAGGAGAAGCTGCAAATGGCAGTCAAGAAGTTCTCAAGGGACAGCATCAAAGGCATCAGTGATTTCTTGGCTGAGCTCACCATCATCAACTGTCTCCGTTACAAGAACCTTGTGCGCTTACTAGGATGGTGCCACAACAAAGGGACACTACTGTTGGTATACGAATACATGCCTAATGGAAGTTTGGATAACCACATTTTCTTTGAGAAAGGGACTACCAAAACCCCACTAAGTTGGAGTCTAAGATATAAGATCTTATTAGACGTGGCTTTTGCACTAAATTACCTGCACAATGAGTATGATCAAAAAGTGGTGCATAGAGATCTCAAAGCAAGCAACATTATGCTTGATTCCGACTTCAATGCACGATTAGGTGACTTTGGCTTAGCTCGAACGCTTGACAACGAGAAAACCTCGTATGCCGAGGGTGTACCAGCAGGGACTCGGGGCTACATTGCGCCGGAGTGCCTTTACACCGGTAAGGCCACGTGCGAGTCCGATGTGTATGGATTTGGAGCTGTGTTACTCGAGGTAGTGTGTGGTCAACGACCATGGGCAAAGATTGGGGGGCATCATTTCTTGGTGGGCTGGGTTTGGCAGTTACATGGTGAAGGGAAGATTCTAGAAGCAGTGGACCCCAGACTTGGGAATGATTTTGTGGCTGAAGAGGCAGAGAGGATCTTGACATTGGGGCTAGTATGCTCTCACCCCATGGCTCCTGAGAGGCCCAAGATGCAAACAATTGTTCAGATCATATCAGGGTCAGGTTCCACCCTTCAAGCCACCTTTTGTGTGGCCTGCCGTGGATCAAGGCCCTACAGCTGCCACTTTAGAGTGCTCTCCCATTAA 1380 0.4775 MVWVEYDGVKKEMEVYMAESQYHYDGPIVAEKPSKAVLSSHLDLKGLVNDMSYFGFSASTGNYYELNAIFRWNLSVEVLPNYSMSSARNDNYWWKTGVGVGVGAPLLALLITGVMHFLRRKIRESGSDPKLLSTLKRLPGTPSEFRFRELKIATNNFHDSNKLGQGGFGIVYRGTLPKEKLQMAVKKFSRDSIKGISDFLAELTIINCLRYKNLVRLLGWCHNKGTLLLVYEYMPNGSLDNHIFFEKGTTKTPLSWSLRYKILLDVAFALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARTLDNEKTSYAEGVPAGTRGYIAPECLYTGKATCESDVYGFGAVLLEVVCGQRPWAKIGGHHFLVGWVWQLHGEGKILEAVDPRLGNDFVAEEAERILTLGLVCSHPMAPERPKMQTIVQIISGSGSTLQATFCVACRGSRPYSCHFRVLSH* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0235 459 SMART serkin_6 157 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0235 459 PANTHER - 2 439 - -
Amo05g0235 459 Gene3D Transferase(Phosphotransferase) domain 1 234 439 - -
Amo05g0235 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Amo05g0235 459 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 178 IPR013320 -
Amo05g0235 459 ProSitePatterns Protein kinases ATP-binding region signature. 163 187 IPR017441 GO:0005524
Amo05g0235 459 Pfam Legume lectin domain 2 77 IPR001220 GO:0030246
Amo05g0235 459 Gene3D Phosphorylase Kinase; domain 1 142 233 - -
Amo05g0235 459 ProSiteProfiles Protein kinase domain profile. 157 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0235 459 Pfam Protein kinase domain 157 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0235 459 Gene3D - 1 78 - -
Amo05g0235 459 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 2 439 - -
Amo05g0235 459 SUPERFAMILY Protein kinase-like (PK-like) 138 428 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0235 Amo-Chr5 3025599 3028144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0235 3 430 Receptor kinase-like Gene Family AT5G55830 41.814 6.48e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo05g0235 Pkinase 9.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0235 - - gmx:100784558 564.303